View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20523_low_10 (Length: 328)

Name: NF20523_low_10
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20523_low_10
NF20523_low_10
[»] chr5 (1 HSPs)
chr5 (20-315)||(4406065-4406360)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 4406360 - 4406065
Alignment:
Q  20 gaacaaacacatgcatcatgtgattgtgaaaatcaacctaagataaataaacctcaacggttgaatttttaacagtgaaacaaacggggcaaacaccgaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4406360 gaacaaacacatgcatcatgtgattgtgaaaatcaacctaagataaataaacctcaacggttgaatttttaacagtgaaacaaacggggcaaacaccgaa 4406261  T
Q  120 acgtgtgtcacattcagtacaaacacataaatgtcgacacggcaacacaacaaccgaagcaacccgttctccgcagcctctacatttaggacccgaccca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  4406260 acgtgtgtcacattcagtacaaacacataaatgtcgacacggcaacacaacaaccgaagcaacccgttctccacaccctctacatttaggacccgaccca 4406161  T
Q  220 acaacagccctttccgggtcaatataacccgactccgcatcctcggcgtgaccctcaacacctaaggcgcaagatagcccacattcattttcacct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4406160 acaacagccctttccgggtcaatataacccgactccgcatcctcggcgtgaccctcaacacctaaggcgcaagatagcccacattcattttcacct 4406065  T

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