View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20523_low_13 (Length: 280)
Name: NF20523_low_13
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 24147685 - 24147426
Alignment:
| Q |
13 |
aatatactaaaaagttagagtcgctcatagttctaaactagtaaacatagttgtgttcatctaaacattacaataaacgtttcattcctaaccttttaac |
112 |
Q |
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||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
24147685 |
aatatgctaaaaagttatagtcactcatagttctaaactagtaaacatagttgtgttcatctaaacatttcaacaaacgtttcattcctaaccttttaac |
24147586 |
T |
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| Q |
113 |
tcttatgaactttttgaatctttgatgtgcgttgtaaacttgattgattaacgttacattgtcttttatttaatttttcaaagtcatcaagatattcctt |
212 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24147585 |
tcttatgaactttttgaatct--------cgttgtaaatttgattgattaacgttacattgtcttttctttaatttttcaaagtcatcaagatattcctt |
24147494 |
T |
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| Q |
213 |
agttgcatcatattctttctaattcagcaacagactcattttcttcctcatttaaactacaaacaata |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24147493 |
agttgcatcatattctttctaattcagcaacagactcattttcttcctcatttaaactaccaacaata |
24147426 |
T |
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