View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20523_low_14 (Length: 277)
Name: NF20523_low_14
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 7734266 - 7734016
Alignment:
| Q |
11 |
aatgaaaaggacaaaagtttacaaatcaccatcttactcaattattaaaagggaaacaacaaaagctacttaaactcgtaataatctcactcaactgaaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
7734266 |
aatgaaaaggacaaaagtttacaaatcaccatcttactcaattattaaaagggaaacaacagtagctacttaaactcataataatctcactcaactgaaa |
7734167 |
T |
|
| Q |
111 |
tgaaactttcaccagattttaccatcttattcactgagttggagttggaacaacttgcattttgaaggcggagggaagagctgaatcctaatttagaaga |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
7734166 |
tgaaactttcactagattttaccatcttattcactgaattggagttggaacaacttgcattttgaaggagcaaggaagagctgaatcctaatttagaaga |
7734067 |
T |
|
| Q |
211 |
aaccaaatcaaactccaacacaatgtcctccaactggtgtccaccaataac |
261 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7734066 |
aaccaaatcaaactccaatacaatgtcctccaactggtgtccaccaataac |
7734016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 7726836 - 7726594
Alignment:
| Q |
15 |
aaaaggacaaaagtttacaaatcaccatcttactcaattattaaaagggaaacaacaaaagctacttaaactcgtaataatctcactcaactgaaatgaa |
114 |
Q |
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||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7726836 |
aaaaggacaaaagtt-acaaatgaccatcttactcaatta---aaagggaaacaacaaaagctacttaaactcgtaataatctcactcaactgaaatgaa |
7726741 |
T |
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| Q |
115 |
actttcaccagattttaccatcttattcactgagttggagttggaacaacttgcattttgaaggcggagggaagagctgaatcctaatttagaagaaacc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7726740 |
actttcaccagattttaccatcttattcactgagttggagttggaacaacttgcattttgaaggaggagggaagagctgaatcctaatttagaagaaacc |
7726641 |
T |
|
| Q |
215 |
aaatcaaactccaacacaatgtcctccaactggtgtccaccaataac |
261 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7726640 |
aaatcaaactccaatacaatgtcctccaactggtgtccaccaataac |
7726594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 7711811 - 7711709
Alignment:
| Q |
156 |
tggaacaacttgcattttgaaggcggagggaagagctgaatcctaatttagaagaaaccaaatcaaactccaacacaatgtcctccaactggtgtccacc |
255 |
Q |
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||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||| ||||||||||| |
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| T |
7711811 |
tggaacaacttccattttgaaggagcaaggaagagctgaatcctaatttagaagaaatcaaatcaaactccaatagattgtcctccaattggtgtccacc |
7711712 |
T |
|
| Q |
256 |
aat |
258 |
Q |
| |
|
||| |
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|
| T |
7711711 |
aat |
7711709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 7745666 - 7745770
Alignment:
| Q |
11 |
aatgaaaaggacaaaagtttacaaatcaccatcttactcaattattaaaagggaaacaacaaaagctacttaaactcgtaataatctcactcaactgaaa |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||| || ||||||||| |||||||||||||||||||| ||||| |||||||||| ||||| |
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| T |
7745666 |
aatgaaaaggacaaaagtt-acaaatcaccatcttacacaacta---aaagggaaataacaaaagctacttaaactcataatactctcactcaattgaaa |
7745761 |
T |
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| Q |
111 |
tgaaacttt |
119 |
Q |
| |
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||||||||| |
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|
| T |
7745762 |
tgaaacttt |
7745770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 7699786 - 7699683
Alignment:
| Q |
158 |
gaacaacttgcattttgaaggcggagggaagagctgaatcctaatttagaagaaaccaaatcaaactccaacacaatgtcctccaactggtgtccaccaa |
257 |
Q |
| |
|
||||| |||||||| ||||| | |||||||||||||||||||||||||| ||||| ||||||||||||| | | |||||||||| ||||| ||||||| |
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| T |
7699786 |
gaacatcttgcattatgaagaagcagggaagagctgaatcctaatttagatgaaactaaatcaaactccagtagattgtcctccaattggtgcccaccaa |
7699687 |
T |
|
| Q |
258 |
taac |
261 |
Q |
| |
|
|||| |
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|
| T |
7699686 |
taac |
7699683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 7745818 - 7745883
Alignment:
| Q |
193 |
gaatcctaatttagaagaaaccaaatcaaactccaacacaatgtcctccaactggtgtccaccaat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||| |
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| T |
7745818 |
gaatcctaatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtccaccaat |
7745883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 7704492 - 7704384
Alignment:
| Q |
153 |
agttggaacaacttgcattttgaaggcggagggaagagctgaatcctaatttagaagaaaccaaatcaaactccaacacaatgtcctccaactggtgtcc |
252 |
Q |
| |
|
|||||||| | |||| ||| |||||| | ||||||||| ||||||||||||| |||||||| |||||||||||||| | | | |||||||| ||||| || |
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| T |
7704492 |
agttggaatatcttgaattatgaaggggaagggaagagatgaatcctaatttggaagaaactaaatcaaactccaatagattctcctccaattggtgccc |
7704393 |
T |
|
| Q |
253 |
accaataac |
261 |
Q |
| |
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||||||||| |
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| T |
7704392 |
accaataac |
7704384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 7711891 - 7711824
Alignment:
| Q |
54 |
attaaaagggaaacaacaaaagctac-ttaaactcgtaataatctcactcaactgaaatgaaactttcac |
122 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||||| | |||||| |
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| T |
7711891 |
attaaaagggaaacaacaaaagttactttaaactc--aataatctcactcgactgaaatgagattttcac |
7711824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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