View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20523_low_18 (Length: 248)
Name: NF20523_low_18
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_low_18 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 35334234 - 35334047
Alignment:
| Q |
43 |
gaggaatcctcccccgtccacagcccaatttcacctccgcaacctccgtctcctcccatcgtagttcaagatcctccacctaagcagataattgaagatt |
142 |
Q |
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| T |
35334234 |
gaggaatcctcccccgtccacagcccaatttcacctccgcaacctccgtctcctcccatcgtagttcaagatcctccacctaagcagataattgaagatt |
35334135 |
T |
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| Q |
143 |
ctcgatccgacgatcaccatgaccacgacgtgcctccttccgcttacgacgtctctcaccatgctcaattattggctgaggtagtttc |
230 |
Q |
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| T |
35334134 |
ctcgatccgacgatcaccatgaccacgacgtgcctccttccgcttacgacgtctctcaccatgctcaattattggctgaggtagtttc |
35334047 |
T |
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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 76776 - 76736
Alignment:
| Q |
101 |
tcgtagttcaagatcctccacctaagcagataattgaagat |
141 |
Q |
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| T |
76776 |
tcgtagttcaatatcctccacacaagcagataattgaagat |
76736 |
T |
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