View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20523_low_19 (Length: 247)
Name: NF20523_low_19
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 31651702 - 31651920
Alignment:
| Q |
9 |
gaagaatattgagagaagaattgctgattttacttttatacctgtaggtgtgttgtgttctttctcccttttgtttttcccattgttcataaaattaatg |
108 |
Q |
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| T |
31651702 |
gaagaatattgagagaagaattgctgattttacttttatacctgtaggtgtgttgtgttcattctcccttatgtttttcc-attgttcataaaattaagg |
31651800 |
T |
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| Q |
109 |
tttgatgctccggcaaatgttttatgatccaacgatatatcaacaaagtagaatattttccgttgtcttggccatctagacttaaacaaccattacttga |
208 |
Q |
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| T |
31651801 |
tttgatgctccagcaaatgttttatgatccaacgatatatcaccaaagtagaatattttccgttgtcttggccatctagacttaaacaaccattacttga |
31651900 |
T |
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| Q |
209 |
actgtgtttcacaatatgca |
228 |
Q |
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| T |
31651901 |
actgtgtttcacaatatgca |
31651920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 31656485 - 31656631
Alignment:
| Q |
13 |
aatattgagagaagaattgctgattttacttttatacctgtaggtgtgt--tgtgttctttctcccttttgtttttcccattgttcataaaattaatgtt |
110 |
Q |
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| T |
31656485 |
aatattgagaaaagaatcgctgattttacttttatacctgtaggtgcgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggct |
31656584 |
T |
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| Q |
111 |
tgatgctccggcaaatgttttatgatccaacgatatatcaacaaagt |
157 |
Q |
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| T |
31656585 |
tgatgctcctgctagtgctttttgattcaaccatgtatcaacgaagt |
31656631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 31630139 - 31630248
Alignment:
| Q |
12 |
gaatattgagagaagaattgctgattttacttttatacctgtaggtgtgt--tgtgttctttctcccttttgtttttcccattgttcataaaattaatgt |
109 |
Q |
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| T |
31630139 |
gaatattgagaaaagaatcgctgattttacttttatacctgtaggtgcgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggc |
31630238 |
T |
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| Q |
110 |
ttgatgctcc |
119 |
Q |
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|||||||||| |
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| T |
31630239 |
ttgatgctcc |
31630248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 31637411 - 31637459
Alignment:
| Q |
14 |
atattgagagaagaattgctgattttacttttatacctgtaggtgtgtt |
62 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31637411 |
atatcgagaaaagaattgctgattttacttttatacctgtaggtgtgtt |
31637459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 31646246 - 31646292
Alignment:
| Q |
12 |
gaatattgagagaagaattgctgattttacttttatacctgtaggtg |
58 |
Q |
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| T |
31646246 |
gaatattgagcaaagaattgctgattttacttttatacctgtaggtg |
31646292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 31630337 - 31630377
Alignment:
| Q |
188 |
acttaaacaaccattacttgaactgtgtttcacaatatgca |
228 |
Q |
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| T |
31630337 |
acttaaacaaccattacttgagccgtgtttcacattatgca |
31630377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 31656687 - 31656723
Alignment:
| Q |
192 |
aaacaaccattacttgaactgtgtttcacaatatgca |
228 |
Q |
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| T |
31656687 |
aaacaaccattacttgagccgtgtttcacaatatgca |
31656723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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