View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20523_low_2 (Length: 695)

Name: NF20523_low_2
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20523_low_2
NF20523_low_2
[»] chr1 (3 HSPs)
chr1 (6-675)||(7644303-7644971)
chr1 (199-273)||(7351904-7351979)
chr1 (386-462)||(11801376-11801451)
[»] chr8 (2 HSPs)
chr8 (49-279)||(26568336-26568565)
chr8 (303-466)||(26568569-26568726)
[»] chr4 (5 HSPs)
chr4 (52-187)||(24556875-24557009)
chr4 (182-256)||(28313616-28313690)
chr4 (207-276)||(23998964-23999033)
chr4 (386-462)||(24557063-24557138)
chr4 (411-462)||(24826668-24826718)
[»] chr7 (2 HSPs)
chr7 (408-462)||(23792799-23792852)
chr7 (386-444)||(18573722-18573780)
[»] chr5 (1 HSPs)
chr5 (197-277)||(22876454-22876534)
[»] chr2 (6 HSPs)
chr2 (411-462)||(13968980-13969030)
chr2 (192-251)||(25056840-25056899)
chr2 (411-464)||(37349816-37349868)
chr2 (199-235)||(5169282-5169318)
chr2 (199-235)||(45107971-45108007)
chr2 (199-235)||(45109690-45109726)
[»] chr6 (2 HSPs)
chr6 (200-277)||(24633788-24633865)
chr6 (410-462)||(34220017-34220068)
[»] chr3 (2 HSPs)
chr3 (411-464)||(17472049-17472101)
chr3 (408-464)||(23459299-23459354)


Alignment Details
Target: chr1 (Bit Score: 619; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 6 - 675
Target Start/End: Original strand, 7644303 - 7644971
Alignment:
Q  6 agtgagatgaagtataccaagctcaccacaaagtaagttgtgcagataaacttatggtcccaactcaagaatatgcatgctttgattttgcatgtcttgt 105  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  7644303 agtgatatgaagtatactaagctcaccacaaagtaagttgtgcagataaacttatggtcccaactcaagaatatgcatgctctgatttcgcatgtcttgt 7644402  T
Q  106 acaaacgatcaccgtctttgaaaagcgtgtcttaactttacacgttctatactgatgagttgcagcctagatcaagcgcgaccattctcgtaccagacaa 205  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7644403 acaaacgatcactgtctttgaaaagcgtgtcttaactttacacgttctatactgatgagttgcagcctagatcaagcgcgaccattctcgtaccagacaa 7644502  T
Q  206 ccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatccatgactatatcaacaaatccaggacta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7644503 ccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatccatgactatatcaacaaatccaggacta 7644602  T
Q  306 taaaa-ggggcacttaggaggcaccaaagaaggaatagataatcttgaacgatgtattttcatctatatcttatttggacttgctcttaaaattctacct 404  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  7644603 taaaagggggcacttaggaggcaccaaagaaggaatagataatcttgaacgatgtattttcatctataccttatttggac-tgctcttaaaattctacct 7644701  T
Q  405 caaacatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaatataataatatagtcgttcatttttaatttgtcttttttgag 504  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7644702 caaacatttcattgaacaactcacatgttgtaattaacttgtgt-ttacatacgtgaatataataatatagtcgttcatttttaatttgtcttttttgag 7644800  T
Q  505 taataatgatagggaggattggtccaccaacgatttaaatcatacgaaaatattttgaatttagtcttaacctaccaccaaacttgaactttcacattat 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7644801 taataatgatagggaggattggtccaccaacgatttaaatcatacgaaaatattttgaatttagtcttaacctaccaccaaacttgaactttcatattat 7644900  T
Q  605 cgagcaatcacgatactaaaaaagcatgaaaccgcaaaatgttgctggataagcaatcacgtttgttgttg 675  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7644901 cgagcaatcacgatactaaaaaagcatgaaaccgcaaaatgttgctggataagcaatcacgtttgttgttg 7644971  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 7351979 - 7351904
Alignment:
Q  199 cagacaaccaatgcgaggctctggatcacaaattaatagg-tatgagtgaccaaagaaatgctcattaaatcaaca 273  Q
    ||||||||||||| ||||||||||||||||| ||||| || | ||| ||| |||||||| || ||||||| |||||    
T  7351979 cagacaaccaatgggaggctctggatcacaacttaatgggctttgaatgatcaaagaaaggcccattaaaccaaca 7351904  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 386 - 462
Target Start/End: Original strand, 11801376 - 11801451
Alignment:
Q  386 tgctcttaaaattctacctcaaacatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 462  Q
    ||||||| |||||| |||| | |||||||| |||||  ||||| |||| |||||||||||||| | |||||||||||    
T  11801376 tgctcttgaaattccacctaagacatttcactgaaccgctcacctgttataattaacttgtgt-tcacatacgtgaa 11801451  T

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Target: chr8 (Bit Score: 115; Significance: 5e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 49 - 279
Target Start/End: Original strand, 26568336 - 26568565
Alignment:
Q  49 agataaacttatggtcccaactcaagaatatgcatgctttgattttgcatgtcttgtacaaacgatcaccgtctttgaaaagcgtgtcttaactttacac 148  Q
    |||||||||| |||||| | ||||| |||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||| |||||||||| |||     
T  26568336 agataaacttgtggtcctagctcaataatatgcatgctttgatttcacatgtcttgtacaaacgatcaacgtctttgaaa-gcgcgtcttaacttcacat 26568434  T
Q  149 gttctatactgatgagttgcagcctagatcaagcgcgaccattctcgtaccagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgac 248  Q
    ||||| ||  || |||||||||||||||||| |||| |||   |||  ||||||||||||||| |||||| |||||||||||||||| ||| ||||||||    
T  26568435 gttctgtatggacgagttgcagcctagatcacgcgcaaccgcactcaaaccagacaaccaatgggaggctttggatcacaaattaatgggtctgagtgac 26568534  T
Q  249 caaagaaatgctcattaaatcaacaaatcca 279  Q
    ||||||||||| |||||| ||||||||||||    
T  26568535 caaagaaatgcccattaagtcaacaaatcca 26568565  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 466
Target Start/End: Original strand, 26568569 - 26568726
Alignment:
Q  303 ctataaaaggggcacttaggaggcaccaaagaaggaatagataatcttgaacgatgtattttcatctatatcttatttggacttgctcttaaaattctac 402  Q
    |||||||||||||||||||||||||||      || || ||| || |||||   ||||||||||||||  |||||||| || | ||||||| |||||  |    
T  26568569 ctataaaaggggcacttaggaggcacctc----gggatggatgattttgaatagtgtattttcatctaagtcttatttagagt-gctcttagaattcctc 26568663  T
Q  403 ctcaaacatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaatata 466  Q
    ||  ||||||||| | |||| ||||  ||||||||||||||||||| |||||||| ||||||||    
T  26568664 ctagaacatttcactcaacagctcatctgttgtaattaacttgtgt-ttacatacatgaatata 26568726  T

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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 52 - 187
Target Start/End: Original strand, 24556875 - 24557009
Alignment:
Q  52 taaacttatggtcccaactcaagaatatgcatgctttgattttgcatgtcttgtacaaacgatcaccgtctttgaaaagcgtgtcttaactttacacgtt 151  Q
    ||||||| |||||||| |||||||||||||||||| ||||| | ||||||||| ||||||||||| ||||||| ||||||  |||||||||| || ||||    
T  24556875 taaacttgtggtcccagctcaagaatatgcatgctctgattctacatgtcttgcacaaacgatcaacgtcttt-aaaagcacgtcttaacttcacgcgtt 24556973  T
Q  152 ctatactgatgagttgcagcctagatcaagcgcgac 187  Q
    |  ||| || |||||||||| ||||||| |||||||    
T  24556974 ccgtacggacgagttgcagcttagatcacgcgcgac 24557009  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 28313616 - 28313690
Alignment:
Q  182 cgcgaccattctcgtaccagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaa 256  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| |||  |||| ||  ||||| ||||||||||    
T  28313616 cgcgaccatactcgaaccagacaaccaatgcgaggctctggatcgcaacataatgggcttgagtaaccaaagaaa 28313690  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 23998964 - 23999033
Alignment:
Q  207 caatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaat 276  Q
    ||||| ||||||||||||||||| ||||| ||  || ||||||||||||| || ||||||||||||||||    
T  23998964 caatgggaggctctggatcacaacttaatgggcttgggtgaccaaagaaaggcccattaaatcaacaaat 23999033  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 462
Target Start/End: Original strand, 24557063 - 24557138
Alignment:
Q  386 tgctcttaaaattctacctcaaacatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 462  Q
    |||||||||||||| |||| ||||||| || | ||||||| || | ||||||||||||| ||| |||||||||||||    
T  24557063 tgctcttaaaattccacctaaaacattccactaaacaacttaccttttgtaattaacttatgt-ttacatacgtgaa 24557138  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 462
Target Start/End: Original strand, 24826668 - 24826718
Alignment:
Q  411 tttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 462  Q
    ||||||||| || ||||| ||||||||||||||||||| |||||||||||||    
T  24826668 tttcattgagcagctcacctgttgtaattaacttgtgt-ttacatacgtgaa 24826718  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 23792799 - 23792852
Alignment:
Q  408 acatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 462  Q
    |||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||    
T  23792799 acatttcactgagcaactcacatgttgtaattatcttgtgt-ttacatacgtgaa 23792852  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 18573722 - 18573780
Alignment:
Q  386 tgctcttaaaattctacctcaaacatttcattgaacaactcacatgttgtaattaactt 444  Q
    |||||||  |||||||||| | |||||||||||| |||||||| | |||||||||||||    
T  18573722 tgctcttggaattctacctaagacatttcattgagcaactcaccttttgtaattaactt 18573780  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 22876454 - 22876534
Alignment:
Q  197 accagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatc 277  Q
    |||||| |||||| | |||||||||| | |||| || || ||  |||||||||||||||| || |||||||||||||||||    
T  22876454 accagagaaccaacgggaggctctggttgacaactttatgggcttgagtgaccaaagaaaggcccattaaatcaacaaatc 22876534  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 462
Target Start/End: Original strand, 13968980 - 13969030
Alignment:
Q  411 tttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 462  Q
    ||||||||| || ||||| ||||||||||||||||||| |||||||||||||    
T  13968980 tttcattgagcagctcacttgttgtaattaacttgtgt-ttacatacgtgaa 13969030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 25056899 - 25056840
Alignment:
Q  192 ctcgtaccagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaa 251  Q
    |||||||||||||||| ||| |||||||| |||||||| ||||| ||  |||||||||||    
T  25056899 ctcgtaccagacaacctatgagaggctcttgatcacaacttaatggggttgagtgaccaa 25056840  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 37349816 - 37349868
Alignment:
Q  411 tttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaata 464  Q
    ||||| ||| || ||||| ||||||||||||||||||| |||||||||||||||    
T  37349816 tttcactgagcagctcacctgttgtaattaacttgtgt-ttacatacgtgaata 37349868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 5169282 - 5169318
Alignment:
Q  199 cagacaaccaatgcgaggctctggatcacaaattaat 235  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  5169282 cagacaaccaatgggaggctctggatcacaacttaat 5169318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 45108007 - 45107971
Alignment:
Q  199 cagacaaccaatgcgaggctctggatcacaaattaat 235  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  45108007 cagacaaccaatgggaggctctggatcacaacttaat 45107971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 45109726 - 45109690
Alignment:
Q  199 cagacaaccaatgcgaggctctggatcacaaattaat 235  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  45109726 cagacaaccaatgggaggctctggatcacaacttaat 45109690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 24633865 - 24633788
Alignment:
Q  200 agacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatc 277  Q
    |||||||||||| || |||||| ||||||| ||||| ||  ||||| |||||||||| | ||||||| |||| |||||    
T  24633865 agacaaccaatgagaagctctgaatcacaacttaatgggcttgagttaccaaagaaaggatcattaagtcaataaatc 24633788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 34220068 - 34220017
Alignment:
Q  410 atttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 462  Q
    |||||||||| ||||| || | ||||||||||||||||| |||||||||||||    
T  34220068 atttcattgagcaacttacctattgtaattaacttgtgt-ttacatacgtgaa 34220017  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 17472049 - 17472101
Alignment:
Q  411 tttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaata 464  Q
    ||||| ||| || ||||| ||||||||||||||||||| |||||||||||||||    
T  17472049 tttcactgagcagctcacctgttgtaattaacttgtgt-ttacatacgtgaata 17472101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 408 - 464
Target Start/End: Complemental strand, 23459354 - 23459299
Alignment:
Q  408 acatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaata 464  Q
    |||||||| | | |||||||| | ||||||||||||||||| |||||||||||||||    
T  23459354 acatttcactcagcaactcacctattgtaattaacttgtgt-ttacatacgtgaata 23459299  T

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