View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20523_low_23 (Length: 235)

Name: NF20523_low_23
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20523_low_23
NF20523_low_23
[»] chr6 (26 HSPs)
chr6 (95-220)||(25483459-25483584)
chr6 (95-220)||(26056322-26056447)
chr6 (95-220)||(26076292-26076417)
chr6 (96-220)||(25511343-25511463)
chr6 (95-220)||(26143267-26143393)
chr6 (95-220)||(25538942-25539068)
chr6 (1-60)||(25538848-25538907)
chr6 (1-60)||(26143173-26143232)
chr6 (1-55)||(25580027-25580081)
chr6 (95-220)||(25580121-25580247)
chr6 (1-60)||(26056234-26056293)
chr6 (1-60)||(26076204-26076263)
chr6 (1-60)||(25482050-25482109)
chr6 (1-57)||(27592843-27592899)
chr6 (1-57)||(27677437-27677493)
chr6 (1-57)||(27679254-27679310)
chr6 (1-57)||(27706225-27706281)
chr6 (1-57)||(26802750-26802806)
chr6 (21-60)||(25511268-25511307)
chr6 (135-209)||(26646920-26646993)
chr6 (135-209)||(26752888-26752961)
chr6 (1-60)||(26646787-26646843)
chr6 (1-60)||(26752755-26752811)
chr6 (148-208)||(27604373-27604433)
chr6 (1-57)||(27698317-27698373)
chr6 (1-41)||(27718218-27718258)
[»] chr1 (1 HSPs)
chr1 (1-60)||(28127489-28127545)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-41)||(3259-3299)
scaffold0349 (1-41)||(14195-14235)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 25483459 - 25483584
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaatt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25483459 atgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaatt 25483558  T
Q  195 gcataatctattctcaatgcatggat 220  Q
    |||| || ||||||||||||||||||    
T  25483559 gcatgatatattctcaatgcatggat 25483584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 26056322 - 26056447
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaatt 194  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26056322 atgcctaaataatctactcttaaagcttaaacatggagggatttctatcaatggttttaaaactagtgtaagttatttatatgtcaaaaaagttagaatt 26056421  T
Q  195 gcataatctattctcaatgcatggat 220  Q
    ||||||| |||| ||||| |||||||    
T  26056422 gcataatatattatcaatacatggat 26056447  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 26076292 - 26076417
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaatt 194  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26076292 atgcctaaataatctactcttaaagcttaaacatggagggatttctatcaatggttttaaaactagtgtaagttatttatatgtcaaaaaagttagaatt 26076391  T
Q  195 gcataatctattctcaatgcatggat 220  Q
    ||||||| |||| ||||| |||||||    
T  26076392 gcataatatattatcaatacatggat 26076417  T

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Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 25511343 - 25511463
Alignment:
Q  96 tgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||| |||||| |||||||||    
T  25511343 tgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaag----ttatatgtaaaaaaatttagaattg 25511438  T
Q  196 cataatctattctcaatgcatggat 220  Q
    |||||| |||| ||||| |||||||    
T  25511439 cataatatattatcaatacatggat 25511463  T

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Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 26143267 - 26143393
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgattt-ctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaat 193  Q
    |||||||||||||||||||| |||||||||| | | |   |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26143267 atgcctaaataatctactctcaaagcttaaataggaacacattttctattaatgtttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaat 26143366  T
Q  194 tgcataatctattctcaatgcatggat 220  Q
    |||||||| |||||||||| |||||||    
T  26143367 tgcataatatattctcaatacatggat 26143393  T

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Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 25538942 - 25539068
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgattt-ctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaat 193  Q
    |||||||||||||||||||||||| |||||| | | |   |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  25538942 atgcctaaataatctactcttaaaacttaaataggaacacattttctattaatgtttttaaaacaagtgtaagttatttatatgtcaaaaaaattagaat 25539041  T
Q  194 tgcataatctattctcaatgcatggat 220  Q
    |||||||| |||||||||| |||||||    
T  25539042 tgcataatatattctcaatacatggat 25539068  T

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Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25538848 - 25538907
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25538848 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 25538907  T

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Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26143173 - 26143232
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26143173 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttg 26143232  T

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Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25580027 - 25580081
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25580027 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 25580081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 25580121 - 25580247
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgattt-ctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaat 193  Q
    |||||| ||||||||| |||| ||||||||| | | |  ||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||| ||||||    
T  25580121 atgcctcaataatctaatcttcaagcttaaataggaacagattttctattaatgtttttaaaacaagtgtaagttaattatatttcaaaaaaggtagaat 25580220  T
Q  194 tgcataatctattctcaatgcatggat 220  Q
    || ||||| | |||||||| |||||||    
T  25580221 tgaataatattttctcaatacatggat 25580247  T

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Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26056234 - 26056293
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  26056234 tgctaacttgtccggctatcattatagtcctcatgagtaccctactttacttaaatcttg 26056293  T

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Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26076204 - 26076263
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  26076204 tgctaacttgtccggctatcattatagtcctcatgagtaccctactttacttaaatcttg 26076263  T

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Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25482050 - 25482109
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  25482050 tgctaatttgtccggctatcattatagtcctcatgagtaccccactttacttaaaacttg 25482109  T

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Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27592899 - 27592843
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27592899 tgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27592843  T

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Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27677493 - 27677437
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27677493 tgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27677437  T

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Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27679254 - 27679310
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27679254 tgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27679310  T

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Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27706281 - 27706225
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27706281 tgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27706225  T

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Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 26802750 - 26802806
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| ||||||||| | ||||||| ||||||||||||||    
T  26802750 tgctaacttgtccggctaccatgatagtcctcctcggtacccaactttacttaaatc 26802806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 25511268 - 25511307
Alignment:
Q  21 attatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  25511268 attatagtcctcatgggtaccctactttacttaaatcttg 25511307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 26646920 - 26646993
Alignment:
Q  135 atttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatctattctc 209  Q
    |||| |||||||| ||||||| ||||| ||| ||||||||||||||||| |||||||| || ||||| |||||||    
T  26646920 atttttattaatgtttttaaa-caagtataaattatttatatgtcaaaagagttagaactgtataatatattctc 26646993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 26752888 - 26752961
Alignment:
Q  135 atttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatctattctc 209  Q
    |||| |||||||| ||||||| ||||| ||| ||||||||||||||||| |||||||| || ||||| |||||||    
T  26752888 atttttattaatgtttttaaa-caagtataaattatttatatgtcaaaagagttagaactgtataatatattctc 26752961  T

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Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26646787 - 26646843
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||| || |||||||||||   |||||||||||||||||||||| ||||    
T  26646787 tgctaacttgtccggataccattatagtcc---tgggtaccccactttacttaaaccttg 26646843  T

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Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26752755 - 26752811
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||| || |||||||||||   |||||||||||||||||||||| ||||    
T  26752755 tgctaacttgtccggataccattatagtcc---tgggtaccccactttacttaaaccttg 26752811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 27604433 - 27604373
Alignment:
Q  148 gttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatctattct 208  Q
    ||||| |||||||| | ||||||||||||||||||| |||||||| || ||||| ||||||    
T  27604433 gtttttaaacaagtattagttatttatatgtcaaaatagttagaaatgtataatatattct 27604373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27698373 - 27698317
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| |||||||||   ||||||| ||||||||||||||    
T  27698373 tgctaacttgtccggctaccatgatagtcctcccaggtacccaactttacttaaatc 27698317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27718258 - 27718218
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtacc 41  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  27718258 tgctaacttgtccggctaccatgatagtcctcctgggtacc 27718218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28127545 - 28127489
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    |||||||||||||||||| |||||||||||    |||||||| ||| |||||||||||||    
T  28127545 tgctaacttgtccggctaccattatagtcc---agggtaccctactatacttaaatcttg 28127489  T

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Target: scaffold0349 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3299 - 3259
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtacc 41  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  3299 tgctaacttgtccggctaccatgatagtcctcctgggtacc 3259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14235 - 14195
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtacc 41  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  14235 tgctaacttgtccggctaccatgatagtcctcctgggtacc 14195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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