View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20523_low_5 (Length: 474)
Name: NF20523_low_5
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 45928325 - 45928708
Alignment:
| Q |
18 |
gtaataattgtcaaccaactcaagttaacaaaccaaaattaaaacnnnnnnnnngaaaggcaaaataaataaataaaatactaatataggctcgagatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928325 |
gtaataattgtcaaccaactcaagttaacaaaccaaaattaaaacttttttttttaaaggcaaaataaataaataaaatactaatataggctcgagatgt |
45928424 |
T |
|
| Q |
118 |
ccaaagattatgacaaatgcttacaatgtcaatacaaagcttacagtactccaataattatatcagaggagaatgtgaatcaactagatggaactttatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45928425 |
ccaaagattatgacaaatgcttacaatgtcaatacaaagcttacagtactccaataattatatcagaggagaatgagaatcaactagatggaactttatt |
45928524 |
T |
|
| Q |
218 |
agaatacaaatggaggaagttacaccataatagaaagaaaaaaccaaatctagtagaaggatactactagcctagccattaattctaagatgatcctctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928525 |
agaatacaaatggaggaagttacaccataatagaaagaaaaaaccaaatctagtagaaggatactactagcctagccattaattctaagatgatcctctt |
45928624 |
T |
|
| Q |
318 |
acacctctctcaccaaatttacttcggataaggcctagctgtaatatgcaatatgctgtctattatgcatcagcactgccccaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
45928625 |
acacctctctcaccaaatttacttcggataaggcctagctgtaatatgcaataggctgtctattatgcatcagcaccgccccaa |
45928708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 45934199 - 45934251
Alignment:
| Q |
408 |
ttcggactgcattgggtgatttcattatcatgcaactgcatttagcctctgtg |
460 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45934199 |
ttcggactgccttgggtgatttcattatcatgcaactgcatttagcctctgtg |
45934251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 15816433 - 15816485
Alignment:
| Q |
408 |
ttcggactgcattgggtgatttcattatcatgcaactgcatttagcctctgtg |
460 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15816433 |
ttcggactgccttgggtgatttcattatcatgcaactgcaattagcctctgtg |
15816485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 48302698 - 48302727
Alignment:
| Q |
33 |
caactcaagttaacaaaccaaaattaaaac |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48302698 |
caactcaagttaacaaaccaaaattaaaac |
48302727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University