View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20523_low_6 (Length: 448)
Name: NF20523_low_6
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 11451310 - 11450871
Alignment:
| Q |
1 |
atatgtctggccgtttgaaagacattataaaatacaagggctttcaggtatcaaactttttgtttattaaacttctataagaaaaagttcttatacaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11451310 |
atatgtctggccgtttgaaagacattataaaatacaagggctttcaggtatcaaactttttgtttattaaacttctataagaaaaagttcttatacaatt |
11451211 |
T |
|
| Q |
101 |
tatttttactaaacatgcatgcattgttcttatctatgatacatgatctattacagattgctcctgctgatttagaagctttgttaatatcgcatcctga |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11451210 |
tatttttactaaacatgtatgcattgttcttatctatgatacatgatctattacagattgctcctgctgatttagaagctttgttaatttcgcatcctga |
11451111 |
T |
|
| Q |
201 |
aatagttgatgccgccgttacagcgtaagtactaagtatatgaacactttgtttatgtctttgtcttctaaagtgcctctttggacattaaaatatgact |
300 |
Q |
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| T |
11451110 |
aatagttgatgccgccgttacagcgtaagtactaagtatatgaacactttgtttatgtctttgtcttctaaagtgcctctttggacattaaaatatgact |
11451011 |
T |
|
| Q |
301 |
ttgagtattacatcattttcgatatcagtggcaaggttgatgtagctggggagattccagtggcatttgtggtcaagaaagtcggaagtgtactttcttc |
400 |
Q |
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| T |
11451010 |
ttgagtattacatcattttcgatatcagtggcaaggttgatgtagctggggagattccagtggcatttgtggtcaagaaagtcggaagtgtactttcttc |
11450911 |
T |
|
| Q |
401 |
acagcatgtgatcgattacgttgctaagcaggttcatctc |
440 |
Q |
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| T |
11450910 |
acagcatgtgatcgattacgttgctaagcaggttcttctc |
11450871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 154 - 435
Target Start/End: Complemental strand, 11440642 - 11440379
Alignment:
| Q |
154 |
cagattgctcctgctgatttagaagctttgttaatatcgcatcctgaaatagttgatgccgccgttacagcgtaagtactaagtatatgaacactttgtt |
253 |
Q |
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|||||| |||||||||||||||||||| | ||||| | |||||||||||||| ||||| ||||||||||| | |||||||||||| || | | |
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| T |
11440642 |
cagattcctcctgctgatttagaagctgttttaattttgcatcctgaaatagctgatgtcgccgttacaggg-------taagtatatgaaaacatcatg |
11440550 |
T |
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| Q |
254 |
tatgtctttgtcttctaaagtgcctctttggacattaaaatatgactttgagtattacatcattttcgatatcagtggcaaggttgatgtagctggggag |
353 |
Q |
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|| |||||||||| || |||||||| |||| |||||| || | || |||||||||| | ||||||| |||| ||| | |||||||||| |
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| T |
11440549 |
ta------tgtcttctaaggtttctctttgggcatttaaatataac-----atgttgcatcattttccacatcagtgcaaaggatgaagaagctggggag |
11440461 |
T |
|
| Q |
354 |
attccagtggcatttgtggtcaagaaagtcggaagtgtactttcttcacagcatgtgatcgattacgttgctaagcaggttc |
435 |
Q |
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| T |
11440460 |
attccagtggcatttgtggtcaagaaggttggaagtgtactttctccaaaggatgttatcgatttcgttgctaagcaggttc |
11440379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 11440787 - 11440712
Alignment:
| Q |
4 |
tgtctggccgtttgaaagacattataaaatacaagggctttcaggtatcaaactttttgtttattaaacttctata |
79 |
Q |
| |
|
|||||| ||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||| || |||| |
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| T |
11440787 |
tgtctgaccgcttgaaagaatttatcaaatacaagggctttcaggtatcattttttttgtttattaaaattttata |
11440712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 29914251 - 29914347
Alignment:
| Q |
135 |
tatgatacatgatctattacagattgctcctgctgatttagaagctttgttaatatcgcatcctgaaatagttgatgccgccgttacagcgtaagta |
231 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||| || ||||||||||||||| |
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| T |
29914251 |
tatgacacatgatctgttacagattgctcctgctgatttagaagccgtgttaattttgcatcctgaaataattgatgcagctgttacagcgtaagta |
29914347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 434
Target Start/End: Original strand, 29914408 - 29914579
Alignment:
| Q |
264 |
tcttctaaagtgcctctttggacattaaaatatgactttgagtattacatcatttt-cgatatcagtggcaaggttgatgtagctggggagattccagtg |
362 |
Q |
| |
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|||||||||||||||||||||||||| | ||| || | | | |||||||||||| | ||||||||| | | | ||| | | |||||| ||||||||| |
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| T |
29914408 |
tcttctaaagtgcctctttggacattttattataacctcaaatgttacatcatttttccatatcagtgccgaagatgaagaaattggggaaattccagtg |
29914507 |
T |
|
| Q |
363 |
gcatttgtggtcaagaaagtcggaagtgtactttcttcacagcatgtgatcgattacgttgctaagcaggtt |
434 |
Q |
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|| ||||| |||||||| || ||||||||||||||| | || ||||| || |||| |||||| |||||||| |
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| T |
29914508 |
gcgtttgttgtcaagaaggttggaagtgtactttctccgaaggatgtggtcaattatgttgctgagcaggtt |
29914579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 29914129 - 29914166
Alignment:
| Q |
15 |
ttgaaagacattataaaatacaagggctttcaggtatc |
52 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||| |
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| T |
29914129 |
ttgaaagacattatcaaatacaagggatttcaggtatc |
29914166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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