View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20523_low_7 (Length: 440)
Name: NF20523_low_7
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 36 - 422
Target Start/End: Complemental strand, 30273530 - 30273150
Alignment:
| Q |
36 |
atagctgtagagtacaaaacaaccaaaaggagttcttagagatgatggaggtaatttcttgtttgcttttgcagcaaagcttcatccctgattcgtctac |
135 |
Q |
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| T |
30273530 |
atagctgtagagtacaaaacaaccaaaaggagttcttagagatgatggaggtaatttcttgtttgcttttgcagcaaagcttcat------ttcgtctac |
30273437 |
T |
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| Q |
136 |
cataccgaacacctgtggatgctattcaccggatttttgacaacttcggtttcattttttcgaatccatctatacagagaggttaacatgtggctgctaa |
235 |
Q |
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| T |
30273436 |
cacaccgaacacctgtggatgctattcaccggatttttgacaacttcggtttcattttttcagatccatctatacagagaggttaacatgtggctgctaa |
30273337 |
T |
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| Q |
236 |
ttttccggattcatctatacactagttctactacaaataagccaatgattgatagaacttttggtcattttatccgggtgttagtggatatggagctcaa |
335 |
Q |
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| T |
30273336 |
ttttccggattcatctaaacactagttctactacaaataagccaatgattgatagaacttttggtcattttgttcgggtgttagtggatatggagctcaa |
30273237 |
T |
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| Q |
336 |
aattgaaccaaaatataaaatccttgtggagagaacaatattttcttttattgctgggatcgaatatggaaacatgcatgattttta |
422 |
Q |
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| T |
30273236 |
aattgaaccaaaatataaaatccttgtggagagaacaatattttcttttattgctgggattgaatatggaaacatgcatgattttta |
30273150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 30434668 - 30434538
Alignment:
| Q |
255 |
cactagttctactacaaataagccaatgattgatagaacttttggtcattttatccgggtgttagtggatatggagctcaaaattgaaccaaaatataaa |
354 |
Q |
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| T |
30434668 |
cactatttctaccacaaataagttaatacctgatagaacttttgctcattttgttcgggtgttagtggacatggaactcaaaatttaatcaaaatataaa |
30434569 |
T |
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| Q |
355 |
atccttgtggagagaacaatattttctttta |
385 |
Q |
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| T |
30434568 |
atctttgttgaaagaacaatattttctttta |
30434538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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