View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20523_low_9 (Length: 340)
Name: NF20523_low_9
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 3337642 - 3337350
Alignment:
| Q |
15 |
tatcaagttttgtgtgcagatataaattatgggttattcctgatgatataattagcagtgctatataccacgatgaaaattatcccgaagggaatgcgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3337642 |
tatcaagttttgtgtgcagatataaattatgggttattcctgatgatataattagcagtgctatataccacgatgaaaattatcccgaagggaatgcgaa |
3337543 |
T |
|
| Q |
115 |
acacttctcgtgaaattctcgctatgtgattgttcgctataaacagcatttccctgatagtataatttaagagcaatgctatattaagcgaaaatttgct |
214 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3337542 |
acacttctcgtgaaactctccctatgtgattgttcgctataaacaacatttccctgatagtataatttaagagcaatgctatattaagcgaaaatttgct |
3337443 |
T |
|
| Q |
215 |
tcgcgaatctatcaagaagtgatgtgtaaccgtgtgaaggaatttatagttcggtaaatcatgggaattcatggagttgggtggtcaaagttt |
307 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3337442 |
tcgcgaatctatcaagaagtgatgggtaaccgtgtgaaggaatttatagttcggtaaatcatgggaattcatggagttgggtggtcaaagttt |
3337350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 53822919 - 53822776
Alignment:
| Q |
185 |
gagcaatgctatattaagcgaaaatttgcttcgcgaatctatcaagaagtgatgtgtaaccgtgtgaaggaatttatagttcggtaaatcatgggaattc |
284 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||| || ||||| ||||||||||||||||| |
|
|
| T |
53822919 |
gagcaatgctatattaagcgaaaacttgcttcacgaatccatcaagaagtgatgtgtaaccgtgtaaaggaacttgcagttctgtaaatcatgggaattc |
53822820 |
T |
|
| Q |
285 |
atggag---ttgggtggtcaaagtttgataacttttgaaaaaac |
325 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| | ||||||||| |
|
|
| T |
53822819 |
atggagatcatgggtagtcaaagtttgttaacatgtgaaaaaac |
53822776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University