View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20524_high_1 (Length: 570)

Name: NF20524_high_1
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20524_high_1
NF20524_high_1
[»] chr6 (2 HSPs)
chr6 (1-561)||(32371639-32372198)
chr6 (1-215)||(32364989-32365196)


Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 32371639 - 32372198
Alignment:
Q  1 tggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattcatgaataaataaa 100  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32371639 tggccttttatgcatcaaaaa-tgttagcttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattcatgaataaataaa 32371737  T
Q  101 tactgtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggctc 200  Q
    |||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32371738 tactgtttggaattgtatttatatcatggttaaaaagcttgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggctc 32371837  T
Q  201 gccaacataatcgttttctggacagatgcgagaaaagctcacgattatggagttcgaannnnnnnctaaaaaagcccaaatcgcagtaccgcctcacagt 300  Q
     | |||||| |||||||||||||||||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  32371838 acgaacatattcgttttctggacagatgcgagaaaaactcacgattatggagttcgaatttttttctaaaaaagcccaaatcgcagtaccgcctcacagt 32371937  T
Q  301 ttattgaattctaagagttgtatcctaatatcttctctaatctctagtctttgtgtttctcttaaatctctgtgtgatactgttgctttgtgtcatctct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  32371938 ttattgaattctaagagttgtatcctaatatcttctctaatctctagtctttgtgtttctcttacatctctgtgtgacactgttgctttgtgtcatctct 32372037  T
Q  401 ggctttcgtctcagacgagttgcactgtgttttttcggccttctcttgtgttcgcatgtcaggtttgtggtcctcttctcttttttcgtttgtctggttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32372038 ggctttcgtctcagacgagttgcactgtgttttttcggccttctcttgtgttcgcatgtcaggtttgtggtcctcttctcttttttcgtttgtctggttt 32372137  T
Q  501 gcaatgctttgtccagtctgatatgttcctcttttctattttgtctggctctgtgctgctc 561  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||    
T  32372138 gcaatgctttgtccagtctgatgtgttcctcttttctattttgcctggctgtgtgatgctc 32372198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 32365196 - 32364989
Alignment:
Q  1 tggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattcatgaataaataaa 100  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||     ||| |||| ||||||||||||||||||||   ||||||||||||| ||||    
T  32365196 tggccttttatgcattaaaaaatgttaccttttatgctttcaaag-----actatgccctattttcaccttggaattgc---aattcatgaataa-taaa 32365106  T
Q  101 tact--gtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggc 198  Q
    ||||  || |||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| |    
T  32365105 tactctgtctggaattgtatttatatcatggttagcaaactcgcaagtcagctcgtagagttggccaagtttacgagtccagctacccatacaagttgac 32365006  T
Q  199 tcgccaacataatcgtt 215  Q
    |||| ||||||||||||    
T  32365005 tcgcgaacataatcgtt 32364989  T

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