View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20524_high_16 (Length: 244)
Name: NF20524_high_16
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20524_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 45865946 - 45866170
Alignment:
| Q |
20 |
tgtcgaagtatacgcttctcaactactcaaaacagaagaaattatacctgctggaagaatgtgcgagcttcgttttcttgcaacctacccttttgtgcta |
119 |
Q |
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| T |
45865946 |
tgtcgaagtatacgcttctcaactactcaaaacagaagaaattatacctgctggaagaatgtgcgagcttcgttttcttgcaacctacccttttgtgcta |
45866045 |
T |
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| Q |
120 |
tgtagtcaaagaactctccattttccgcatattccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtatgacgtgatgatgcat |
219 |
Q |
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| T |
45866046 |
tgtagtcaaagagatctccattttccgcatattccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtataacgtgatgatgcat |
45866145 |
T |
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| Q |
220 |
gaacatttttaaaatttctatttct |
244 |
Q |
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| T |
45866146 |
gaacatttttaaaatttctatttct |
45866170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 243
Target Start/End: Complemental strand, 17404332 - 17404139
Alignment:
| Q |
50 |
aacagaagaaattatacctgctggaagaatgtgcgagcttcgttttcttgcaacctacccttttgtgctatgtagtcaaagaactctccattttccgcat |
149 |
Q |
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| T |
17404332 |
aacaaaagtaattatacctgctggaagaaactgcgagcttcatcttcttgaagcctacccttttctactatgtaatcaaaaagttctccagatttcacat |
17404233 |
T |
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| Q |
150 |
attccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtatgacgtgatgatgcatgaacatttttaaaatttctatttc |
243 |
Q |
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| T |
17404232 |
actccatcaccacataaatatcagttggggtttctacaacctcgtaaaggcgtataatgtggtgatgcatgaacaatcttaaaatttttatttc |
17404139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 4054707 - 4054915
Alignment:
| Q |
25 |
aagtatacgcttctcaactactcaaaacagaagaaattatacctgctggaagaatgtgcgagcttcgttttcttgcaacctacccttttgtgctatgtag |
124 |
Q |
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| T |
4054707 |
aagtataagcttctcaagtatgcaaaaaa-aagtaattatacctgctggaagaaactgcgggcttcatcttcttgtagcctacccttttctacaatgtaa |
4054805 |
T |
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| Q |
125 |
tcaaagaactctccattttccgcatattccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtatgacgtgatgatgcatgaaca |
224 |
Q |
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| T |
4054806 |
tcaaagagctctccggatttcacatactccatcacaacataaatgtctgtaggggtttccacaacctcataaaggcgtatgatgtgatggtgcatgaaca |
4054905 |
T |
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| Q |
225 |
tttttaaaat |
234 |
Q |
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| T |
4054906 |
atcttaaaat |
4054915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 17966756 - 17966875
Alignment:
| Q |
110 |
ttttgtgctatgtagtcaaagaactctccattttccgcatattccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtatgacgt |
209 |
Q |
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|||||| ||||||||||||||| | |||||| |||| ||||||| ||||||| |||||||| ||||| || |||||||||||||||||| ||||| | || |
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| T |
17966756 |
ttttgtactatgtagtcaaagagcactccatgttccacatattcaatcaccacatatatgtatgttggggattctacaacctcataaagtcgtataatgt |
17966855 |
T |
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| Q |
210 |
gatgatgcatgaacattttt |
229 |
Q |
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| T |
17966856 |
gatgatgcatgaacaatttt |
17966875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 17968003 - 17967883
Alignment:
| Q |
110 |
ttttgtgctatgtagtcaaagaactctccattttccgcatattccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtatgacgt |
209 |
Q |
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|||||| ||||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||| |||||||| ||||| ||||||||||| | || |
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| T |
17968003 |
ttttgtactatgtagtcaaagagctctccatgttccgcatattccatcacc--acatatgtctgttggggtttctagaaccttataaaggcgta-catgt |
17967907 |
T |
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| Q |
210 |
gatgatgcatgaacatttttaaaa |
233 |
Q |
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| T |
17967906 |
gatgatgcatgcatatttttaaaa |
17967883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 4046305 - 4046373
Alignment:
| Q |
61 |
ttatacctgctggaagaatgtgcgagcttcgttttcttgcaacctacccttttgtgctatgtagtcaaa |
129 |
Q |
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| T |
4046305 |
ttatacctgctgaaaaaatttgcgcgcttcatcttcgtgcaacctacccttttctactatgtaatcaaa |
4046373 |
T |
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