View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20524_high_4 (Length: 391)

Name: NF20524_high_4
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20524_high_4
NF20524_high_4
[»] chr6 (2 HSPs)
chr6 (13-373)||(13551987-13552349)
chr6 (13-49)||(24062042-24062078)
[»] chr7 (3 HSPs)
chr7 (46-95)||(12597074-12597123)
chr7 (13-47)||(45022682-45022716)
chr7 (13-49)||(11321502-11321538)
[»] chr8 (3 HSPs)
chr8 (13-47)||(38804895-38804929)
chr8 (13-42)||(32889137-32889166)
chr8 (13-49)||(32889011-32889047)
[»] chr4 (6 HSPs)
chr4 (13-51)||(11974899-11974937)
chr4 (15-48)||(27866450-27866483)
chr4 (13-49)||(3729297-3729333)
chr4 (13-49)||(11333060-11333096)
chr4 (13-49)||(37144065-37144101)
chr4 (13-49)||(38001256-38001292)
[»] chr3 (5 HSPs)
chr3 (13-47)||(28096097-28096131)
chr3 (13-42)||(22102179-22102208)
chr3 (13-49)||(3422862-3422898)
chr3 (13-49)||(7116198-7116234)
chr3 (13-49)||(42897087-42897123)
[»] chr5 (1 HSPs)
chr5 (13-49)||(38938824-38938860)
[»] chr1 (1 HSPs)
chr1 (13-49)||(8007192-8007228)


Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 13552349 - 13551987
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatatcagcttgagtccttgccatatcagcttgctagattgcagattcattatgaaataggggtcata 112  Q
    ||||| || ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13552349 tgaaaagggtagttttctttacctataatagagatatcagcttgagtccttgccatatcagcttgctagattgcagattcattatgaaataggggtcata 13552250  T
Q  113 tccattgaat--tacaactccagtctccttgaaatgttgggagacgaactcagccaagacttttggagggtcttcttttaaaataggggaaatcatccaa 210  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  13552249 tccattgaatattacaactccagtctccttgaaatgttgggagacgaactcagccaacacttctggagggtcttcttttgaaataggggaaatcatccaa 13552150  T
Q  211 gtatgcagtctgagcataggttatctctagctcttgatcagttgtaattacatatcctttctggatgatgcctatattccctagagtcactcgatacaac 310  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13552149 gtatgcagtctgagcataggttatctctaggtcttgatcagttgtaattacatatcctttctggatgatgcctatattccctagagtcactcgatacaac 13552050  T
Q  311 atgttgtagcttctgaaccagctttccttggtgaaagatttttgaaagaaaccatgcataagt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13552049 atgttgtagcttctgaaccagctttccttggtgaaagatttttgaaagaaaccatgcataagt 13551987  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 24062078 - 24062042
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    |||||||||||||||||||||||||||||| ||||||    
T  24062078 tgaaagggatagttttctttatatatagtatagatat 24062042  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 12597123 - 12597074
Alignment:
Q  46 atatcagcttgagtccttgccatatcagcttgctagattgcagattcatt 95  Q
    ||||||||||| ||||||||||||| || ||||| |||||||||||||||    
T  12597123 atatcagcttgggtccttgccatattagtttgctggattgcagattcatt 12597074  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 45022682 - 45022716
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagat 47  Q
    |||||||||||||||||||||||||||||| ||||    
T  45022682 tgaaagggatagttttctttatatatagtatagat 45022716  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 11321502 - 11321538
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  11321502 tgaaaggggtagttttctttatatatagtatagatat 11321538  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 38804895 - 38804929
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagat 47  Q
    |||||||||||||||||||||||||||||| ||||    
T  38804895 tgaaagggatagttttctttatatatagtatagat 38804929  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 32889166 - 32889137
Alignment:
Q  13 tgaaagggatagttttctttatatatagta 42  Q
    ||||||||||||||||||||||||||||||    
T  32889166 tgaaagggatagttttctttatatatagta 32889137  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 32889047 - 32889011
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  32889047 tgaaagggatagttttctttatctatagtatagatat 32889011  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 11974899 - 11974937
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatatca 51  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  11974899 tgaaaggggtagttttctttatatatagtatagatatca 11974937  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 27866450 - 27866483
Alignment:
Q  15 aaagggatagttttctttatatatagtagagata 48  Q
    |||||||||||||||||||||||||||| |||||    
T  27866450 aaagggatagttttctttatatatagtatagata 27866483  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 3729333 - 3729297
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  3729333 tgaaatggatagttttctttatatatagtatagatat 3729297  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 11333096 - 11333060
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  11333096 tgaaaggggtagttttctttatatatagtatagatat 11333060  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 37144065 - 37144101
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  37144065 tgaaaggggtagttttctttatatatagtatagatat 37144101  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 38001292 - 38001256
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  38001292 tgaaagggacagttttctttatatatagtatagatat 38001256  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 28096131 - 28096097
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagat 47  Q
    |||||||||||||||||||||||||||||| ||||    
T  28096131 tgaaagggatagttttctttatatatagtatagat 28096097  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 22102208 - 22102179
Alignment:
Q  13 tgaaagggatagttttctttatatatagta 42  Q
    ||||||||||||||||||||||||||||||    
T  22102208 tgaaagggatagttttctttatatatagta 22102179  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 3422862 - 3422898
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  3422862 tgaaagggacagttttctttatatatagtatagatat 3422898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 7116198 - 7116234
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  7116198 tgaaaggggtagttttctttatatatagtatagatat 7116234  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 42897087 - 42897123
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  42897087 tgaaaggggtagttttctttatatatagtatagatat 42897123  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 38938824 - 38938860
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  38938824 tgaaaggggtagttttctttatatatagtatagatat 38938860  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 8007228 - 8007192
Alignment:
Q  13 tgaaagggatagttttctttatatatagtagagatat 49  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  8007228 tgaaagggatagttttctttatgtatagtatagatat 8007192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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