View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20524_low_1 (Length: 570)

Name: NF20524_low_1
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20524_low_1
NF20524_low_1
[»] chr6 (2 HSPs)
chr6 (1-561)||(32371639-32372198)
chr6 (1-215)||(32364989-32365196)


Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 32371639 - 32372198
Alignment:
Q  1 tggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattcatgaataaataaa 100  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32371639 tggccttttatgcatcaaaaa-tgttagcttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattcatgaataaataaa 32371737  T
Q  101 tactgtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggctc 200  Q
    |||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32371738 tactgtttggaattgtatttatatcatggttaaaaagcttgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggctc 32371837  T
Q  201 gccaacataatcgttttctggacagatgcgagaaaagctcacgattatggagttcgaannnnnnnctaaaaaagcccaaatcgcagtaccgcctcacagt 300  Q
     | |||||| |||||||||||||||||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  32371838 acgaacatattcgttttctggacagatgcgagaaaaactcacgattatggagttcgaatttttttctaaaaaagcccaaatcgcagtaccgcctcacagt 32371937  T
Q  301 ttattgaattctaagagttgtatcctaatatcttctctaatctctagtctttgtgtttctcttaaatctctgtgtgatactgttgctttgtgtcatctct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  32371938 ttattgaattctaagagttgtatcctaatatcttctctaatctctagtctttgtgtttctcttacatctctgtgtgacactgttgctttgtgtcatctct 32372037  T
Q  401 ggctttcgtctcagacgagttgcactgtgttttttcggccttctcttgtgttcgcatgtcaggtttgtggtcctcttctcttttttcgtttgtctggttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32372038 ggctttcgtctcagacgagttgcactgtgttttttcggccttctcttgtgttcgcatgtcaggtttgtggtcctcttctcttttttcgtttgtctggttt 32372137  T
Q  501 gcaatgctttgtccagtctgatatgttcctcttttctattttgtctggctctgtgctgctc 561  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||    
T  32372138 gcaatgctttgtccagtctgatgtgttcctcttttctattttgcctggctgtgtgatgctc 32372198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 32365196 - 32364989
Alignment:
Q  1 tggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattcatgaataaataaa 100  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||     ||| |||| ||||||||||||||||||||   ||||||||||||| ||||    
T  32365196 tggccttttatgcattaaaaaatgttaccttttatgctttcaaag-----actatgccctattttcaccttggaattgc---aattcatgaataa-taaa 32365106  T
Q  101 tact--gtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggc 198  Q
    ||||  || |||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| |    
T  32365105 tactctgtctggaattgtatttatatcatggttagcaaactcgcaagtcagctcgtagagttggccaagtttacgagtccagctacccatacaagttgac 32365006  T
Q  199 tcgccaacataatcgtt 215  Q
    |||| ||||||||||||    
T  32365005 tcgcgaacataatcgtt 32364989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University