View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20524_low_14 (Length: 248)
Name: NF20524_low_14
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20524_low_14 |
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| [»] scaffold0807 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 12845770 - 12845645
Alignment:
| Q |
96 |
ggtgttgctgaagttttaaggagatgttgtaatattagacatttaagcttagcctcctctttcggcgctaagctatttgaaatgaactttctagttccca |
195 |
Q |
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| T |
12845770 |
ggtgttggtgaagttttaaggagaagcgataagattagacatttgagtttagcctcctccttcggagccaagctacttgagatgaaccttgaagttccca |
12845671 |
T |
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| Q |
196 |
aattagaggtattgaacttgtcccgg |
221 |
Q |
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| T |
12845670 |
aattagaggtattgaacttgtcccgg |
12845645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 32267574 - 32267531
Alignment:
| Q |
174 |
gaaatgaactttctagttcccaaattagaggtattgaacttgtc |
217 |
Q |
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| T |
32267574 |
gaaatgaactttgaagttcccaaattggaggtattgaacttgtc |
32267531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 41889545 - 41889594
Alignment:
| Q |
165 |
aagctatttgaaatgaactttctagttcccaaattagaggtattgaactt |
214 |
Q |
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| T |
41889545 |
aagctacttgaaatgaactttaaagttcccaaattggaggtgttgaactt |
41889594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 12847005 - 12846961
Alignment:
| Q |
35 |
gttatttggaacacctctccctcgtttccaaacagtttctctcca |
79 |
Q |
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| T |
12847005 |
gttacttggaacatctctccctcgtttccaagcagttcctctcca |
12846961 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 7977745 - 7977701
Alignment:
| Q |
106 |
aagttttaaggagatgttgtaatattagacatttaagcttagcct |
150 |
Q |
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| T |
7977745 |
aagttttaaggagatgttgtaacattagacatttaaacctagcct |
7977701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 3438498 - 3438540
Alignment:
| Q |
106 |
aagttttaaggagatgttgtaatattagacatttaagcttagc |
148 |
Q |
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| T |
3438498 |
aagttttaaggagatgttgtaagattagacatttgaacttagc |
3438540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 7307958 - 7307916
Alignment:
| Q |
175 |
aaatgaactttctagttcccaaattagaggtattgaacttgtc |
217 |
Q |
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| T |
7307958 |
aaatgaactttaaagttcccaaattggaggtattgaacttgtc |
7307916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 659873 - 659832
Alignment:
| Q |
109 |
ttttaaggagatgttgtaatattagacatttaagcttagcct |
150 |
Q |
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| T |
659873 |
ttttaaggagatgttgtaacattagatatttaaacttagcct |
659832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 1396 - 1440
Alignment:
| Q |
106 |
aagttttaaggagatgttgtaatattagacatttaagcttagcct |
150 |
Q |
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| T |
1396 |
aagttttaaggagatgttataagattagacatttgaacttagcct |
1440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 7555488 - 7555460
Alignment:
| Q |
49 |
ctctccctcgtttccaaacagtttctctc |
77 |
Q |
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| T |
7555488 |
ctctccctcgtttccaaacagtttctctc |
7555460 |
T |
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