View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20524_low_15 (Length: 245)
Name: NF20524_low_15
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20524_low_15 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 28843253 - 28843009
Alignment:
| Q |
1 |
ataacagaaacaatggttcctctgttgtggatggattcactctgagtcccctaccatatcctgttctgttgatcttagcagtgatcttcatcttccttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28843253 |
ataacagaaacaatggttcctctgttgtggatggattcactctgagtcccctaccatatcctgttctgttgatcttagcagtgatcttcatcttccttgg |
28843154 |
T |
|
| Q |
101 |
tacttcatggtacttttcttatgaagatgttgttgaaactgctcaagaacaatttggttggattctatttgccttaccagtggtgctgatatttatagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28843153 |
tacttcatggtacttttcttatgaagatgttgttgaaactgctcaagaacaatttggttgggttctatttgccttaccagtggtgctgatatttatagtt |
28843054 |
T |
|
| Q |
201 |
cgtttggtatcatcaatggaagattcaggttggttctctgctcct |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
28843053 |
cgtttggtatcatcaatggaagattcaggttggttttctggtcct |
28843009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University