View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20524_low_18 (Length: 238)
Name: NF20524_low_18
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20524_low_18 |
 | |
|
| [»] scaffold0958 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 6241612 - 6241397
Alignment:
| Q |
4 |
tatagtttgatatgggaaaaatggagaacaataatgtgaaccaccttttcacattccattgattcaacacaatttggtccaggttagagttatagataat |
103 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||| ||||||||||| | |
|
|
| T |
6241612 |
tatagtttcatatgggaaaaatggagatcaataatgtgaaccaccttttcacatttcatttatttaaca-aatttggtccaggttacagttatagatagt |
6241514 |
T |
|
| Q |
104 |
tttgcctattcacgaatatttggatataattgtttatttctttcacaaggnnnnnnnnnattgtaatgattacaacataattaatatgtaattttctgtt |
203 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6241513 |
tatgcctattcacgagtatttggatataattgtttatttctttcacaaggtttttac---tggtaatgattacaacataattaatatgtaattttctgtt |
6241417 |
T |
|
| Q |
204 |
agaagttgaatgatgacatt |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6241416 |
agaagttgaatgatgacatt |
6241397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 6233758 - 6233635
Alignment:
| Q |
26 |
ggagaacaataatgtgaaccaccttttcacattccattgattcaacacaatttggtccaggttagagttatagataattttgcctattcacgaatatttg |
125 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| | ||||||||||||| |||||| |
|
|
| T |
6233758 |
ggagatcaataatttgaaccaccttttcacattccattgattgaacacaatttggttcaggttacagttatagatagtcatgcctattcacgagtatttg |
6233659 |
T |
|
| Q |
126 |
gatataattgtttatttctttcac |
149 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6233658 |
gatataattgtttatttctttcac |
6233635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 6233639 - 6233530
Alignment:
| Q |
112 |
ttcacgaatatttggatataattgtttatttctttcacaaggnnnnnnnnnattgtaatgattacaacataattaatatgtaattttctgttagaagttg |
211 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6233639 |
ttcacgagtatttggatataattgtttatttctttcacaag--ttttttatatggtaatgattataacataattaatatgtaattttctgttagaagttg |
6233542 |
T |
|
| Q |
212 |
aatgatgacatt |
223 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6233541 |
aatgatgacatt |
6233530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 13283535 - 13283591
Alignment:
| Q |
167 |
taatgattacaacataattaatatgtaattttctgttagaagttgaatgatgacatt |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13283535 |
taatgattacaacatatttaatatgtaattttatgttagaagttgaatgatgacatt |
13283591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 6138717 - 6138670
Alignment:
| Q |
8 |
gtttgatatgggaaaaatggagaacaataatgtgaaccaccttttcac |
55 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6138717 |
gtttcatatgagaaaaatggagatcaataatgtgaaccaccttttcac |
6138670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 13283379 - 13283426
Alignment:
| Q |
8 |
gtttgatatgggaaaaatggagaacaataatgtgaaccaccttttcac |
55 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13283379 |
gtttcatatgagaaaaatggagatcaataatgtgaaccaccttttcac |
13283426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 6914200 - 6914134
Alignment:
| Q |
23 |
aatggagaacaataatgtgaaccaccttttcacattccattgattcaacacaatttggtccaggtta |
89 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||||| | |||||||| |||||||| ||||||| |
|
|
| T |
6914200 |
aatgtagatcaattatgtgaaccaccttttcacattccgtatattcaacaaaatttggttcaggtta |
6914134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 6914018 - 6913982
Alignment:
| Q |
187 |
atatgtaattttctgttagaagttgaatgatgacatt |
223 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6914018 |
atatgtaattttctgttagaatttgaatgatgacatt |
6913982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 2822 - 2871
Alignment:
| Q |
174 |
tacaacataattaatatgtaattttctgttagaagttgaatgatgacatt |
223 |
Q |
| |
|
|||||||||||| || ||||||||||||||| | |||||||||| ||||| |
|
|
| T |
2822 |
tacaacataattgatgtgtaattttctgttaaatgttgaatgataacatt |
2871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University