View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20524_low_2 (Length: 485)
Name: NF20524_low_2
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20524_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 466
Target Start/End: Original strand, 46184038 - 46184485
Alignment:
| Q |
13 |
aatataatattacttacctgtccaccataagtttaataattaagcttagatttgcataaacaataatactatagcaaagaaatggaagaaatgaaatcag |
112 |
Q |
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| T |
46184038 |
aatataatattacttacctgtccaccataaatttaataattaagcttagatttgcataaacaataatactatagcaaagaaatggaagaaatgaaatcag |
46184137 |
T |
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| Q |
113 |
tatcaataattaataaatccaattcaacctatcgtaggtatggagaggtgttgggcaaatatctaaattccgaggagattgtaattgaaaaatttgatta |
212 |
Q |
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| T |
46184138 |
tatcattaattaataaatccaattcaacctatcgtaggtatggagaggtgttgggcaaatatctaaattccgaggagattgtaattgaaaaatttgatta |
46184237 |
T |
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| Q |
213 |
gttgtggctgaaaagtggaggaatttgagattatatgtgcaactgtactgcatactgcatctgtcaaatgataaacaaattaaagtggcaaagaatgcag |
312 |
Q |
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| T |
46184238 |
gttgtggccgaaaagtggacgaatttgagattatatgtgcaaatg-------tactgcatctgtcaaatgataaacaaattaaagtggcaaagaatgcag |
46184330 |
T |
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| Q |
313 |
agaattggttgaatagtaactgggaatgacaattgagc-tagagcagaattttgacagcagaagaaagcacatcggctcctaatttgaggctgttcctgt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46184331 |
agaattggttgaatagtaactgggaatgacaattgagcttagagcagaattttgacagcagaagaaagcacatcaactcctaatttgaggctgttcctgt |
46184430 |
T |
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| Q |
412 |
cagcattgtgcctgcagcagctcggatgacaacattgcatggcagtagccggatc |
466 |
Q |
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| T |
46184431 |
cagcattgtgcctgcagcagctgggatgacaacattacatggcagtagccggatc |
46184485 |
T |
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