View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20524_low_5 (Length: 374)
Name: NF20524_low_5
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20524_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 18729048 - 18728673
Alignment:
| Q |
1 |
aatgaaatgagatctttttatatataagaaacnnnnnnncaaagtctagtgagagaaacactaagttttgtgtctttctttttctcttaacacaattcat |
100 |
Q |
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| T |
18729048 |
aatgaaatgagatctttttatatataagaaacaaaaaaacaaagtctagtgagagaaacactaagttttgtgtctttctttttctcttaacacaattcat |
18728949 |
T |
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| Q |
101 |
tgttactgagctcagaagctacctaagtagagagaga--atatgaaaacagagtgttttcactgatattctctgcatctttattctatgaaaaatattca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18728948 |
tgttactgagctcagaagctacctaagtagagagagagaatctgaaaacagagtgttttcactgatattctctgcatcttcattctatgaaaaatattca |
18728849 |
T |
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| Q |
199 |
atattttaattttctgggctatcataaaaattgaatctttttgtttcattggatcatcataaacatggcaaaaccaggggtgttagattctgatccagaa |
298 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18728848 |
atattttaattttctgggctatcatcaaaattgaatctttttgtttcattggatcatcataaacatggcaaaaccaggggtgttagattctgatccagaa |
18728749 |
T |
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| Q |
299 |
gttatgttgaagaaagctttagagttgaagaaggagttgaaaaagcttgtgaagtccattgttgatgatgaagata |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18728748 |
gttatgttgaagaaagctttagagttgaagaaggagttgaaaaagcttgtgaagtccattgttgatgatgaagata |
18728673 |
T |
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