View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20524_low_6 (Length: 365)
Name: NF20524_low_6
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20524_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 4329425 - 4329079
Alignment:
| Q |
1 |
cacagcaagaagaagaagctctatttttctgtgtctctgcagcaccaactccaatgatgaacctgataataattcacaacctggaggtgatgttcaaagc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4329425 |
cacagcaagaagaagaagctctgtttttctgtgtctctgcagcaccaactccaatgatgaacctgataataattcaaaacctggaggtgatgttcaaagc |
4329326 |
T |
|
| Q |
101 |
caagagctattggctcaacttgcaatgcttgagacagaaaaagttcgtcttacggattatttggatgaaagatctgaatatttgacacagtttggtgaag |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4329325 |
caagagctactggctcaacttgcaatgcttgagacagaaaaagttcgtcttacggattatttggatgaaagatctgaatatttgacacagtttggtgaag |
4329226 |
T |
|
| Q |
201 |
aagctaaagctgaaattgataagattggtgaagatgctcttaaaggattagatgaagctagtgatagagtatgtatgcacttttcactcactctttactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4329225 |
aagctaaagctgaaattgataagattggtgaagatgctcttaaaggattagatgaagctagtgatagagtatgtatgcacttttcactcactatttactt |
4329126 |
T |
|
| Q |
301 |
gttcaatttgttaaccatgcatagattctagttagctacagagttat |
347 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4329125 |
gttcaatttgttaaccatgcatacattctagttagctacagagttat |
4329079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 273
Target Start/End: Complemental strand, 24493345 - 24493236
Alignment:
| Q |
164 |
gatgaaagatctgaatatttgacacagtttggtgaagaagctaaagctgaaattgataagattggtgaagatgctcttaaaggattagatgaagctagtg |
263 |
Q |
| |
|
||||| ||||||| ||| || || || ||||||||| |||| || |||| |||| |||||||| |||||||| || |||| ||||||||||||||||| |
|
|
| T |
24493345 |
gatgagagatctgcatacttaactcaatttggtgaaaaagcaaactctgagtttgaaaagattggagaagatgcactcaaagaattagatgaagctagtg |
24493246 |
T |
|
| Q |
264 |
atagagtatg |
273 |
Q |
| |
|
|||||||| |
|
|
| T |
24493245 |
ccagagtatg |
24493236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University