View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20524_low_9 (Length: 320)
Name: NF20524_low_9
Description: NF20524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20524_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 4050716 - 4050425
Alignment:
| Q |
18 |
aggtatatggtaggaactaacttttactaataaaacaatgaagactaacttctatagcattttgtttgttccatcatcttctaatagttctttttcaata |
117 |
Q |
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| T |
4050716 |
aggtatatggtaggaactaacttttactaataaaacaatgaagacta-cttctatagcattttgtttgttccatcatcttctaatagttctttttcaata |
4050618 |
T |
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| Q |
118 |
gctgcatttcaaatttctggatcgtgatcaatcagtgttgttaaccgcggattgccaaaaatagtggtttgttcaaattctgttacaaaacagtgatata |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4050617 |
gctgcatttcaaatttctggatcgtgatatctcagtgttgttaaccgcggattgccaaaaatagtggtttgttcaaattctgttacacaacagtgatata |
4050518 |
T |
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| Q |
218 |
gtgccatatacctgctatttgacaatattttggattaaatagcatatggtggaacaataacgannnnnnncaaattccgctacgctatagtct |
310 |
Q |
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| T |
4050517 |
gcgccatatacctgctatttgacaatattttggactaaatagcatatggtgaaacaataacgatttttttcaaattccgctacgctatagtct |
4050425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 279
Target Start/End: Complemental strand, 19391030 - 19390957
Alignment:
| Q |
207 |
acagtgatatagtgcca-tatacctgctatttgacaatattttggattaaatagcatatggtggaacaataacg |
279 |
Q |
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| T |
19391030 |
acagtgctatagcgccactataactgctatttgacaatactttgtactaaatagcttattgtggaacaacaacg |
19390957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 33532434 - 33532535
Alignment:
| Q |
175 |
aaaatagtggtttgttcaaattctgttacaaaacagtgatatagtgcca-tatacctgctatttgacaatattttggattaaatagcatatggtggaaca |
273 |
Q |
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||||||| ||||||||||||||||| ||| ||||||| ||||| || | |||| ||||| |||||||| ||| || | |||||||| ||| ||| |||| |
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| T |
33532434 |
aaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactatagctgctgtttgacaacattctgtactaaatagcgtatagtgtaaca |
33532533 |
T |
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| Q |
274 |
at |
275 |
Q |
| |
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|| |
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| T |
33532534 |
at |
33532535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 16495147 - 16495118
Alignment:
| Q |
175 |
aaaatagtggtttgttcaaattctgttaca |
204 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16495147 |
aaaatagtggtttgttcaaattctgttaca |
16495118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 36323248 - 36323199
Alignment:
| Q |
150 |
cagtgttgttaaccgcggattgccaaaaatagtggtttgttcaaattctg |
199 |
Q |
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| T |
36323248 |
cagtgttgtcaatcgcagatggcgaaaaatagtggtttgttcaaattctg |
36323199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 249
Target Start/End: Original strand, 24673342 - 24673442
Alignment:
| Q |
150 |
cagtgttgttaaccgcggattgccaaaaatagtggtttgttcaaattctgttacaaaacagtgatatagtgcc-atatacctgctatttgacaatatttt |
248 |
Q |
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|||||||||||| |||||| | ||||||||||||||||||||||| | || ||||||||||| ||||| |||| | |||||||||||| ||||| |
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| T |
24673342 |
cagtgttgttaattgcggatcacagaaaatagtggtttgttcaaattcagctatgcaacagtgatatggtgccgctatagcggctatttgacaacatttt |
24673441 |
T |
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| Q |
249 |
g |
249 |
Q |
| |
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| |
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| T |
24673442 |
g |
24673442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 33751173 - 33751209
Alignment:
| Q |
167 |
gattgccaaaaatagtggtttgttcaaattctgttac |
203 |
Q |
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|||||| |||||||| ||||||||||||||||||||| |
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| T |
33751173 |
gattgcaaaaaatagcggtttgttcaaattctgttac |
33751209 |
T |
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