View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20525_high_18 (Length: 330)
Name: NF20525_high_18
Description: NF20525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20525_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 32062750 - 32062504
Alignment:
| Q |
1 |
cgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatcnnnnnnnccgaacaaaatctattggctta |
100 |
Q |
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| T |
32062750 |
cgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttccgaacaaaatctattggctta |
32062651 |
T |
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| Q |
101 |
cctccttgtttctgtttgaggtcatcatcatc---ggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttca |
197 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32062650 |
cctccttgtttctgtttgaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccggtgcattctcttgcttca |
32062551 |
T |
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| Q |
198 |
atgaccttttctttctaacaaagtctattggcttcccaaacatgttg |
244 |
Q |
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| T |
32062550 |
gtgaccttttctttctaacaaagtctattggcttcccaaacatgttg |
32062504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 32062758 - 32062652
Alignment:
| Q |
125 |
tcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttctaacaaagtcta |
224 |
Q |
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|||||||| ||||| || |||||||||| || |||||||||||| |||||| || |||| ||||| ||||||| | | ||||| || | |||||| |||| |
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| T |
32062758 |
tcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttccgaacaaaatcta |
32062659 |
T |
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| Q |
225 |
ttggctt |
231 |
Q |
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| T |
32062658 |
ttggctt |
32062652 |
T |
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