View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20525_high_24 (Length: 321)
Name: NF20525_high_24
Description: NF20525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20525_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 6916396 - 6916688
Alignment:
| Q |
1 |
agagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagcccatgtccctcttaacaatatgtttgggtattctacggctat |
100 |
Q |
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| T |
6916396 |
agagaaaaggtgtgattgttggcaatgttcaggacgaagattattctgtcattacagctcatgtgcctcttaacaatatgtttgggtattctacggctat |
6916495 |
T |
|
| Q |
101 |
tcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaag |
200 |
Q |
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| T |
6916496 |
tcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaag |
6916595 |
T |
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| Q |
201 |
ggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaatttattgggggtagttatctagaaaaaagaattgtagttttggt |
293 |
Q |
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| T |
6916596 |
ggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaattttttgggggtagttatctggaaaaaagaattgtggttttggt |
6916688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 15036049 - 15035941
Alignment:
| Q |
114 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcag |
213 |
Q |
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| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatacaagggcaataaggcac |
15035950 |
T |
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| Q |
214 |
ctgaatgat |
222 |
Q |
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| T |
15035949 |
ctgaatgat |
15035941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
63 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
117 |
Q |
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| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 15037738 - 15037688
Alignment:
| Q |
2 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcat |
52 |
Q |
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|||||| ||| |||||||||||||||||||||||| |||||| |||||||| |
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| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcat |
15037688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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