View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20525_high_25 (Length: 309)

Name: NF20525_high_25
Description: NF20525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20525_high_25
NF20525_high_25
[»] chr4 (45 HSPs)
chr4 (109-309)||(5707320-5707520)
chr4 (109-309)||(5713948-5714148)
chr4 (109-309)||(19926767-19926967)
chr4 (109-309)||(26970463-26970663)
chr4 (109-309)||(55612683-55612883)
chr4 (109-309)||(868597-868797)
chr4 (109-309)||(26963640-26963840)
chr4 (109-309)||(10621340-10621540)
chr4 (109-309)||(10628419-10628619)
chr4 (111-309)||(18262214-18262412)
chr4 (111-309)||(28393141-28393339)
chr4 (111-309)||(4426611-4426808)
chr4 (111-309)||(18269070-18269273)
chr4 (121-307)||(8845215-8845401)
chr4 (121-307)||(8858179-8858365)
chr4 (109-224)||(12357136-12357251)
chr4 (117-308)||(20311299-20311491)
chr4 (115-301)||(5668140-5668327)
chr4 (115-309)||(10677562-10677753)
chr4 (115-309)||(10891202-10891393)
chr4 (111-308)||(5616215-5616414)
chr4 (115-309)||(35223576-35223760)
chr4 (13-73)||(19927003-19927063)
chr4 (17-73)||(5713856-5713912)
chr4 (17-73)||(26963548-26963604)
chr4 (17-73)||(26970371-26970427)
chr4 (17-73)||(5707228-5707284)
chr4 (17-73)||(10621576-10621632)
chr4 (17-73)||(12357044-12357100)
chr4 (19-73)||(868507-868561)
chr4 (15-73)||(17142372-17142430)
chr4 (17-73)||(10628655-10628711)
chr4 (17-73)||(55612594-55612650)
chr4 (17-71)||(28393380-28393434)
chr4 (16-73)||(4426847-4426904)
chr4 (17-73)||(18268976-18269032)
chr4 (135-301)||(21454152-21454319)
chr4 (246-298)||(39074218-39074270)
chr4 (158-225)||(39074278-39074346)
chr4 (24-73)||(55992680-55992729)
chr4 (177-308)||(56516124-56516255)
chr4 (32-73)||(5668371-5668412)
chr4 (25-73)||(8845118-8845166)
chr4 (25-73)||(8858082-8858130)
chr4 (33-73)||(18262136-18262176)
[»] scaffold0234 (4 HSPs)
scaffold0234 (109-309)||(2328-2528)
scaffold0234 (109-309)||(11219-11419)
scaffold0234 (17-73)||(2564-2620)
scaffold0234 (17-73)||(11455-11511)
[»] chr6 (28 HSPs)
chr6 (109-309)||(29308890-29309090)
chr6 (109-309)||(29315850-29316050)
chr6 (111-309)||(16566327-16566525)
chr6 (109-309)||(27381259-27381459)
chr6 (109-309)||(27471642-27471842)
chr6 (111-309)||(17684476-17684674)
chr6 (109-309)||(17691447-17691647)
chr6 (111-309)||(188984-189182)
chr6 (111-309)||(11651725-11651923)
chr6 (111-309)||(25537166-25537364)
chr6 (111-299)||(13359286-13359474)
chr6 (128-301)||(8509941-8510115)
chr6 (148-309)||(20553594-20553755)
chr6 (19-73)||(17691683-17691737)
chr6 (17-66)||(27381502-27381551)
chr6 (17-66)||(27471885-27471934)
chr6 (17-73)||(29308798-29308854)
chr6 (17-73)||(29315758-29315814)
chr6 (17-73)||(17684712-17684768)
chr6 (17-71)||(11651630-11651684)
chr6 (147-309)||(17850502-17850663)
chr6 (132-301)||(27925772-27925946)
chr6 (17-73)||(25537405-25537461)
chr6 (116-171)||(31258065-31258120)
chr6 (125-190)||(22259925-22259990)
chr6 (25-73)||(13359512-13359560)
chr6 (25-73)||(16566563-16566611)
chr6 (16-73)||(189221-189281)
[»] chr1 (26 HSPs)
chr1 (109-309)||(18252030-18252230)
chr1 (109-309)||(18532521-18532721)
chr1 (109-309)||(27131416-27131616)
chr1 (111-309)||(21171240-21171438)
chr1 (111-309)||(27310584-27310782)
chr1 (111-309)||(16359042-16359240)
chr1 (115-301)||(36816648-36816834)
chr1 (109-309)||(3855926-3856126)
chr1 (109-301)||(22657236-22657429)
chr1 (115-309)||(27277564-27277756)
chr1 (143-301)||(12006554-12006712)
chr1 (14-73)||(18532757-18532816)
chr1 (143-308)||(12014292-12014457)
chr1 (16-73)||(18251935-18251992)
chr1 (17-73)||(27310821-27310877)
chr1 (121-307)||(9917927-9918106)
chr1 (17-73)||(16359280-16359336)
chr1 (17-73)||(21171479-21171535)
chr1 (17-66)||(22657472-22657521)
chr1 (115-184)||(30720625-30720694)
chr1 (25-66)||(36816885-36816926)
chr1 (17-73)||(3856164-3856220)
chr1 (17-73)||(27131652-27131704)
chr1 (139-216)||(3403248-3403325)
chr1 (139-216)||(3443494-3443571)
chr1 (17-73)||(27277800-27277856)
[»] chr3 (53 HSPs)
chr3 (112-309)||(13211305-13211502)
chr3 (109-309)||(6110064-6110264)
chr3 (109-309)||(10572599-10572799)
chr3 (111-309)||(16482490-16482688)
chr3 (115-309)||(17781125-17781319)
chr3 (109-309)||(15600891-15601091)
chr3 (109-309)||(15607436-15607636)
chr3 (115-309)||(10579362-10579556)
chr3 (111-309)||(18522665-18522863)
chr3 (109-309)||(13248607-13248807)
chr3 (109-309)||(15357593-15357793)
chr3 (111-309)||(18519980-18520175)
chr3 (109-295)||(8490488-8490674)
chr3 (115-309)||(19089752-19089946)
chr3 (111-309)||(17200191-17200389)
chr3 (109-270)||(18640792-18640953)
chr3 (128-309)||(15342226-15342407)
chr3 (111-309)||(13516813-13517011)
chr3 (115-309)||(32056907-32057101)
chr3 (115-301)||(1647536-1647726)
chr3 (109-301)||(29924971-29925163)
chr3 (109-301)||(29974124-29974316)
chr3 (111-297)||(16200128-16200313)
chr3 (111-297)||(16200434-16200619)
chr3 (116-309)||(24253395-24253589)
chr3 (215-309)||(17136465-17136559)
chr3 (111-173)||(18534758-18534820)
chr3 (17-73)||(6109972-6110028)
chr3 (17-73)||(8490396-8490452)
chr3 (17-73)||(13248515-13248571)
chr3 (17-73)||(13211211-13211267)
chr3 (17-73)||(18640989-18641045)
chr3 (17-66)||(10579604-10579653)
chr3 (111-156)||(18510924-18510969)
chr3 (17-73)||(17136137-17136193)
chr3 (17-66)||(10572841-10572890)
chr3 (17-73)||(15607672-15607729)
chr3 (17-66)||(17200434-17200483)
chr3 (17-73)||(15351237-15351293)
chr3 (17-73)||(15357829-15357885)
chr3 (17-73)||(16482727-16482782)
chr3 (17-73)||(18519885-18519941)
chr3 (16-73)||(1647768-1647825)
chr3 (17-73)||(15601127-15601184)
chr3 (17-73)||(13516719-13516775)
chr3 (17-61)||(17781370-17781414)
chr3 (17-61)||(19089997-19090041)
chr3 (17-73)||(32057144-32057200)
chr3 (17-73)||(18510829-18510885)
chr3 (17-73)||(18522570-18522626)
chr3 (25-73)||(18534671-18534719)
chr3 (17-73)||(29924879-29924935)
chr3 (17-73)||(29974032-29974088)
[»] scaffold0220 (2 HSPs)
scaffold0220 (109-309)||(18288-18488)
scaffold0220 (17-73)||(18196-18252)
[»] chr7 (26 HSPs)
chr7 (109-309)||(29327784-29327984)
chr7 (109-309)||(11536069-11536269)
chr7 (109-309)||(11542987-11543187)
chr7 (111-309)||(15152445-15152643)
chr7 (111-309)||(15148144-15148342)
chr7 (111-309)||(18561009-18561207)
chr7 (111-301)||(12750828-12751018)
chr7 (115-309)||(12738542-12738736)
chr7 (111-301)||(18257857-18258047)
chr7 (115-297)||(13392157-13392338)
chr7 (131-301)||(2364917-2365086)
chr7 (142-301)||(7396221-7396381)
chr7 (115-299)||(39111819-39112002)
chr7 (15-73)||(12738441-12738499)
chr7 (16-73)||(2653275-2653332)
chr7 (17-73)||(11543223-11543279)
chr7 (17-73)||(11536305-11536361)
chr7 (17-73)||(12750733-12750789)
chr7 (17-73)||(15152350-15152406)
chr7 (17-72)||(29327690-29327745)
chr7 (17-73)||(15148049-15148105)
chr7 (183-226)||(3132748-3132791)
chr7 (17-72)||(13392030-13392085)
chr7 (159-224)||(10234179-10234244)
chr7 (109-141)||(2653207-2653239)
chr7 (17-73)||(18258087-18258143)
[»] scaffold0390 (4 HSPs)
scaffold0390 (109-309)||(6941-7141)
scaffold0390 (109-309)||(13957-14157)
scaffold0390 (17-73)||(7177-7233)
scaffold0390 (17-73)||(14193-14249)
[»] chr8 (17 HSPs)
chr8 (109-309)||(21940665-21940865)
chr8 (111-309)||(22171491-22171687)
chr8 (115-309)||(24642655-24642849)
chr8 (111-309)||(28554885-28555083)
chr8 (115-308)||(6094129-6094322)
chr8 (115-242)||(24636860-24636987)
chr8 (14-73)||(22070105-22070164)
chr8 (17-73)||(21940573-21940629)
chr8 (121-309)||(38232384-38232570)
chr8 (130-284)||(2375027-2375179)
chr8 (139-300)||(32872857-32873019)
chr8 (17-66)||(24642556-24642605)
chr8 (17-73)||(6094031-6094087)
chr8 (17-73)||(22171396-22171452)
chr8 (17-73)||(28554791-28554847)
chr8 (147-210)||(10920234-10920297)
chr8 (17-54)||(24636605-24636642)
[»] chr5 (19 HSPs)
chr5 (109-309)||(24695473-24695673)
chr5 (109-309)||(18569870-18570070)
chr5 (111-309)||(19714505-19714703)
chr5 (115-309)||(19707225-19707419)
chr5 (114-297)||(27347497-27347679)
chr5 (115-301)||(22547031-22547217)
chr5 (109-218)||(39537962-39538071)
chr5 (113-294)||(17285754-17285935)
chr5 (115-218)||(31886537-31886640)
chr5 (174-309)||(18807041-18807176)
chr5 (17-73)||(24695709-24695765)
chr5 (113-294)||(17298907-17299088)
chr5 (17-73)||(19714742-19714798)
chr5 (222-309)||(39538701-39538788)
chr5 (17-73)||(19707462-19707518)
chr5 (17-73)||(27347722-27347778)
chr5 (135-225)||(33477389-33477479)
chr5 (25-73)||(18570108-18570156)
chr5 (17-72)||(39537870-39537925)
[»] chr2 (9 HSPs)
chr2 (109-305)||(21330259-21330455)
chr2 (109-309)||(18796506-18796706)
chr2 (111-307)||(18619807-18620002)
chr2 (115-254)||(19692598-19692737)
chr2 (175-301)||(20977958-20978084)
chr2 (15-73)||(21330493-21330551)
chr2 (143-309)||(36270199-36270366)
chr2 (143-301)||(18822115-18822275)
chr2 (17-73)||(19692773-19692829)
[»] scaffold0433 (2 HSPs)
scaffold0433 (109-309)||(7107-7307)
scaffold0433 (17-73)||(7015-7071)
[»] scaffold0186 (2 HSPs)
scaffold0186 (109-309)||(25997-26197)
scaffold0186 (17-72)||(26231-26286)
[»] scaffold0657 (2 HSPs)
scaffold0657 (109-309)||(993-1193)
scaffold0657 (16-73)||(900-957)
[»] scaffold0063 (2 HSPs)
scaffold0063 (111-309)||(5531-5729)
scaffold0063 (25-73)||(5444-5492)
[»] scaffold0008 (2 HSPs)
scaffold0008 (111-292)||(230365-230545)
scaffold0008 (17-73)||(230584-230640)
[»] scaffold0176 (2 HSPs)
scaffold0176 (109-173)||(8446-8510)
scaffold0176 (17-73)||(8546-8602)
[»] scaffold0203 (1 HSPs)
scaffold0203 (17-73)||(23769-23825)
[»] scaffold0326 (2 HSPs)
scaffold0326 (17-65)||(16523-16571)
scaffold0326 (109-142)||(16615-16648)
[»] scaffold0705 (1 HSPs)
scaffold0705 (17-73)||(41-97)
[»] scaffold0637 (1 HSPs)
scaffold0637 (17-73)||(8944-9000)
[»] scaffold0767 (1 HSPs)
scaffold0767 (17-53)||(1-37)
[»] scaffold0565 (2 HSPs)
scaffold0565 (19-73)||(10202-10256)
scaffold0565 (128-159)||(10127-10158)
[»] scaffold0170 (1 HSPs)
scaffold0170 (17-66)||(5878-5927)
[»] scaffold0032 (1 HSPs)
scaffold0032 (138-210)||(92194-92267)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 5707320 - 5707520
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5707320 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 5707419  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5707420 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 5707519  T
Q  309 c 309  Q
    |    
T  5707520 c 5707520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 5713948 - 5714148
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5713948 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagcccatttaatggaacattaagtataacttaattgtgag 5714047  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5714048 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 5714147  T
Q  309 c 309  Q
    |    
T  5714148 c 5714148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 19926967 - 19926767
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19926967 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 19926868  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19926867 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 19926768  T
Q  309 c 309  Q
    |    
T  19926767 c 19926767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 26970463 - 26970663
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26970463 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 26970562  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26970563 accccattaaacataaggaaactattctcaaagtatccgtagtcaagatttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 26970662  T
Q  309 c 309  Q
    |    
T  26970663 c 26970663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 55612683 - 55612883
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  55612683 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 55612782  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55612783 accccattaaacataaggaaactactctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 55612882  T
Q  309 c 309  Q
    |    
T  55612883 c 55612883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 868597 - 868797
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  868597 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 868696  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  868697 accccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 868796  T
Q  309 c 309  Q
    |    
T  868797 c 868797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 26963640 - 26963840
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  26963640 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaaatataacttaattgtgag 26963739  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26963740 accccattaaacataaggaaactattctcaaagtatccgtagtcaagatttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 26963839  T
Q  309 c 309  Q
    |    
T  26963840 c 26963840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 10621540 - 10621340
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10621540 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10621441  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10621440 agcccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 10621341  T
Q  309 c 309  Q
    |    
T  10621340 c 10621340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 10628619 - 10628419
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10628619 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10628520  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  10628519 agcccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatattattaaagcatagagactattatgtaggtaga 10628420  T
Q  309 c 309  Q
    |    
T  10628419 c 10628419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 18262214 - 18262412
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18262214 aaggcatttctttattgattttgtttcgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18262313  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18262314 cccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggtagac 18262412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 28393339 - 28393141
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28393339 aaggcatttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 28393240  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  28393239 cccattaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagac 28393141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 4426808 - 4426611
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4426808 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 4426709  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  4426708 cccgttaaacataagg-aactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagac 4426611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 18269070 - 18269273
Alignment:
Q  111 aaggcatttctttattgatttt-----gttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgt 205  Q
    ||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18269070 aaggcatttctttattgattttgttttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgt 18269169  T
Q  206 gagaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggt 305  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  18269170 gagaccccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggt 18269269  T
Q  306 agac 309  Q
    ||||    
T  18269270 agac 18269273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 8845215 - 8845401
Alignment:
Q  121 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8845215 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8845314  T
Q  221 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtag 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  8845315 ataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtcggatatcattaaagcatagagactattatgtgggtag 8845401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 8858179 - 8858365
Alignment:
Q  121 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8858179 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8858278  T
Q  221 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtag 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  8858279 ataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtcggatatcattaaagcatagagactattatgtgggtag 8858365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 12357136 - 12357251
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12357136 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 12357235  T
Q  209 accccattaaacataa 224  Q
    ||||||||||||||||    
T  12357236 accccattaaacataa 12357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 117 - 308
Target Start/End: Original strand, 20311299 - 20311491
Alignment:
Q  117 tttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaag-tataacttaattgtgagaccccat 215  Q
    ||||||||||||||||||||||||| ||||||||||||| | || |||||||| |   || |||||| ||||||| ||||||||||||||||||||||||    
T  20311299 tttctttattgattttgttttgttttaaaataataaagtacttataatagttaatatgttcaatggagcattaaggtataacttaattgtgagaccccat 20311398  T
Q  216 taaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||| ||| || | |||||||  || |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  20311399 taaacataaggacactgtttttaaagtatttgttgtcaagctttattgtgaagtgagatatcattaaagcatagagactattttgtgggtaga 20311491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 115 - 301
Target Start/End: Complemental strand, 5668327 - 5668140
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||| | | ||||| |||||| ||||    
T  5668327 catttctttgttgattttgttttgtttcaaaataataaagtctctagaataattagtctatttaatggagcattaagtgtgatttaatcgtgaga-ccca 5668229  T
Q  215 ttaaacataaggaaactattctcaaag--tatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    |||||   ||||| | |||||| ||||  |||  ||||||||||||||||| |||  |||||| ||||||| |||||||||||||||||    
T  5668228 ttaaatgaaaggacattattcttaaagtatatttgtagtcaagctttattgtgaaaagagataacattaaatcatagagactattatgt 5668140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 10677753 - 10677562
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| |||| ||||||  | ||||||| |||||||||| ||||||| | |||| ||||    
T  10677753 catttttttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-ccca 10677655  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||||||  || || | |||||| |||||||||||||||||||||||  | ||| ||||||| |||||||| ||| |||||||||||| |||||||    
T  10677654 ttaaacgaaatgatattattcttaaagtatccgtagtcaagcttta--gtgaaatgagataacattaaagtatatagactattatgtgggtagac 10677562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 10891393 - 10891202
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| |||| ||||||  | ||||||| |||||||||| ||||||| | |||| ||||    
T  10891393 catttttttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-ccca 10891295  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||||||  || || | |||||| |||||||||||||||||||||||  | ||| ||||||| |||||||| ||| |||||||||||| |||||||    
T  10891294 ttaaacgaaatgatattattcttaaagtatccgtagtcaagcttta--gtgaaatgagataacattaaagtatatagactattatgtgggtagac 10891202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 111 - 308
Target Start/End: Original strand, 5616215 - 5616414
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |||||| ||||  ||||||||||||| | ||| |||  |||||     
T  5616215 aaggcatttctttattcattttgttttgtttcaaaataataaagttcctaaaataattagtctatttcttggaacattaagtctgactaaatcatgagat 5616314  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaa--gctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||| ||||||   |||| | |||||| ||||||||||| |||||  | ||||||  ||| || ||||| | |||||||| |||||||||||||| |||||    
T  5616315 cccgttaaactagaggacattattcttaaagtatccgttgtcaaaggttttattatgaattgggatattaataaagcattgagactattatgtatgtaga 5616414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 309
Target Start/End: Original strand, 35223576 - 35223760
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| |||||||| | |||||||          |     
T  35223576 catttctttgttgattttgttttgttttaaaataataaagtccctagaataattagtctgtttaatggagcattaagtgtgacttaat----------cg 35223665  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    | ||||  ||||| | |||||| ||||||| ||||||||||||||||||  ||    |||| |||||||||||| |||||||||||| |||||||    
T  35223666 taaaacgaaaggacattattcttaaagtattcgtagtcaagctttattgtaaaaaaggataacattaaagcatatagactattatgtgggtagac 35223760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 19927063 - 19927003
Alignment:
Q  13 aatatgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19927063 aatatgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 19927003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 5713856 - 5713912
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5713856 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 5713912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 26963548 - 26963604
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26963548 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 26963604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 26970371 - 26970427
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26970371 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 26970427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 5707228 - 5707284
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  5707228 tgttggaataagccctaatagccaatctatattgattgtgtttggctttgtatcatg 5707284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 10621632 - 10621576
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  10621632 tgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 10621576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 12357044 - 12357100
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  12357044 tgttggaataagccctaatagccaatctatattgattggatttggctttgtatcatg 12357100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 868507 - 868561
Alignment:
Q  19 ttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  868507 ttggaataaaccctaatagccaatctatattgattgggtttggctttgtatcatg 868561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 17142430 - 17142372
Alignment:
Q  15 tatgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  17142430 tatgttggaaaaagccctaatagccaatctatattgattgggtttgactttgtatcatg 17142372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 10628711 - 10628655
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  10628711 tgttggaataagccctaatagccaatctatattgattggttttgactttgtatcatg 10628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 55612594 - 55612650
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  55612594 tgttagaataagccctaataaccaatctatattgattgggtttggctttgtatcatg 55612650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 28393434 - 28393380
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatca 71  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  28393434 tgttggagtaagccctaatagccaatctatattgattgggtttgactttgtatca 28393380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 4426904 - 4426847
Alignment:
Q  16 atgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| || ||||||    
T  4426904 atgttggagtaagtcctaatagccaatctatattgattgggtttggctctgtatcatg 4426847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 18268976 - 18269032
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||    
T  18268976 tgttggaataagcccaaatagccaatctatgttgaatgggtttggctttgtatcatg 18269032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 301
Target Start/End: Complemental strand, 21454319 - 21454152
Alignment:
Q  135 tttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaag-tataacttaattgtgagaccccattaaacataaggaaactat 233  Q
    ||||||||||| ||||||||| | |||||||||||||    |||||||||||||||  | | |||||||  ||||||||||||||  |||| || | |||    
T  21454319 tttgtttcaaagtaataaagttcttagaatagttagtttgattaatggaacattaaaatgtgacttaatattgagaccccattaattataatgacattat 21454220  T
Q  234 tctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    | | ||| ||||  ||||||| |||||||| ||| ||||||| || ||| ||||| ||| ||||||||    
T  21454219 ttttaaaatatctatagtcaaactttattgtgaaatgagataacaataatgcataaagattattatgt 21454152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 39074270 - 39074218
Alignment:
Q  246 cgtagtcaagctttattgagaagtgagatatcattaaagcatagagactatta 298  Q
    ||||||||  |||||||| ||||||||||||||||||||||| ||||||||||    
T  39074270 cgtagtcatactttattgtgaagtgagatatcattaaagcatggagactatta 39074218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 39074346 - 39074278
Alignment:
Q  158 ctagaatagttagtccatttaa-tggaacattaagtataacttaattgtgagaccccattaaacataag 225  Q
    |||||||| ||||||| ||||| | ||||||||||||| |||||||  |||||||||||||||||||||    
T  39074346 ctagaataattagtccgtttaaattgaacattaagtatgacttaatcatgagaccccattaaacataag 39074278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 55992680 - 55992729
Alignment:
Q  24 ataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||| | ||||||||||||||| ||||| ||||||    
T  55992680 ataagccctaatagccaatttgtattgattgggtttgactttgtatcatg 55992729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 56516124 - 56516255
Alignment:
Q  177 taatggaacattaagtataacttaattgtgagaccccattaaacataaggaa-actattctcaaagtatccgtagtcaagctttattgagaagtgagata 275  Q
    ||||| |||||||| | | |||||||||||||||  |||||| ||||  ||| | ||||||  |||||||  |||||||||||||||| |||    ||||    
T  56516124 taatgaaacattaattgtgacttaattgtgagacttcattaa-catatagaacattattcttgaagtatctatagtcaagctttattgtgaataacgata 56516222  T
Q  276 tcattaaagcatagagactattatgtaggtaga 308  Q
      |||||| ||||||||||||||||||||||||    
T  56516223 gtattaaaacatagagactattatgtaggtaga 56516255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 5668412 - 5668371
Alignment:
Q  32 taatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  5668412 taatagccaatctatattgattgtgtttggttttgtatcatg 5668371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 8845118 - 8845166
Alignment:
Q  25 taagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||| ||||||    
T  8845118 taagtcctaatagccaatctatgttgattgagtttgactttgtatcatg 8845166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 8858082 - 8858130
Alignment:
Q  25 taagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||| ||||||    
T  8858082 taagtcctaatagccaatctatgttgattgagtttgactttgtatcatg 8858130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 18262136 - 18262176
Alignment:
Q  33 aatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||| |||| |||||||||||||| ||||||    
T  18262136 aatagccaatctatgttgaatgggtttggctttgtatcatg 18262176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 2528 - 2328
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2528 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 2429  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2428 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 2329  T
Q  309 c 309  Q
    |    
T  2328 c 2328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 11419 - 11219
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11419 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 11320  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11319 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11220  T
Q  309 c 309  Q
    |    
T  11219 c 11219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 2620 - 2564
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2620 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 2564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 11511 - 11455
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11511 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 11455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 29308890 - 29309090
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29308890 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 29308989  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29308990 agcccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29309089  T
Q  309 c 309  Q
    |    
T  29309090 c 29309090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 29315850 - 29316050
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29315850 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 29315949  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29315950 agcccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29316049  T
Q  309 c 309  Q
    |    
T  29316050 c 29316050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 16566525 - 16566327
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16566525 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 16566426  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16566425 cccgttaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 16566327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 27381459 - 27381259
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27381459 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27381360  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  27381359 accccattaaacatatggaaactattctcaaagtatccatagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 27381260  T
Q  309 c 309  Q
    |    
T  27381259 c 27381259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 27471842 - 27471642
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27471842 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27471743  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  27471742 accccattaaacatatggaaactattctcaaagtatccatagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 27471643  T
Q  309 c 309  Q
    |    
T  27471642 c 27471642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 17684674 - 17684476
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17684674 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 17684575  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17684574 cccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggtagac 17684476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 17691647 - 17691447
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17691647 acaaggcatttctttattgattttgttttctttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 17691548  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  17691547 accccattaaacataaggaaactattcttaaagtatccgtagtcaagctttagtgagaagtgggatatcattaaagcataaagactattatgtaggtaga 17691448  T
Q  309 c 309  Q
    |    
T  17691447 c 17691447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 189182 - 188984
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  189182 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 189083  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  189082 cccattaaacataaggaaactattcttaaagtatttgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtgggtagac 188984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 11651725 - 11651923
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11651725 aaggcatttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 11651824  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11651825 cccattaaaaataaggaaactattctaaaagtatcagtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtgggtagac 11651923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 25537364 - 25537166
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  25537364 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtccgtttaatggaacattaagtataactttattgtgagac 25537265  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25537264 cccgttaaacataaggaaactattcttaaagtattcgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtagac 25537166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 111 - 299
Target Start/End: Complemental strand, 13359474 - 13359286
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||||||||||| |||| ||    
T  13359474 aaggcatttatttatttattttgttttgtttcaaaataataaagtccctagaatagttagttcgcttaatggagcattaagtataacttaatcgtgaaac 13359375  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattat 299  Q
     |||||||||||||  | | |||| | ||||||||||||||||| |||||||| ||| || || | ||||||||| |||||||||||||    
T  13359374 tccattaaacataaaaacattatttttaaagtatccgtagtcaacctttattgtgaaatgggacaacattaaagcgtagagactattat 13359286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 8509941 - 8510115
Alignment:
Q  128 attttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgaga-ccccattaaacataagg 226  Q
    ||||| |||||||| ||||||||||||||  ||||||| |||||| |||| ||||||||||| |||  |||||||| ||||| |||||||||| || |||    
T  8509941 attttattttgttttaaaataataaagtctatagaataattagtctatttgatggaacattatgtacgacttaattatgagacccccattaaatatgagg 8510040  T
Q  227 aaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    |   |||| | |||||||  ||||| ||||||||||  ||| ||||||| ||||||| |||| ||||||||||||    
T  8510041 atgatattattaaagtatatgtagttaagctttattatgaaatgagatagcattaaaacataaagactattatgt 8510115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 309
Target Start/End: Complemental strand, 20553755 - 20553594
Alignment:
Q  148 aataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatccg 247  Q
    ||||||||| |||| |||| |||||| ||||||| || ||||||||  ||||||| |||||| ||||||||| ||||| | | |||||| |||| |||||    
T  20553755 aataaagtctctaggatagctagtccgtttaatgaaatattaagtacgacttaatcgtgagatcccattaaatataagaatattattcttaaagcatccg 20553656  T
Q  248 tagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||| ||  ||||||| |||||||||||  ||||||||||| ||| | |||||| |||||||    
T  20553655 tagtgaatttttattgtgaagtgagataaaattaaagcataaagatttttatgttggtagac 20553594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 17691737 - 17691683
Alignment:
Q  19 ttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17691737 ttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 17691683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 27381551 - 27381502
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27381551 tgttggaataagccctaatagccaatctatattgattgggtttggctttg 27381502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 27471934 - 27471885
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27471934 tgttggaataagccctaatagccaatctatattgattgggtttggctttg 27471885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 29308798 - 29308854
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  29308798 tgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 29308854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 29315758 - 29315814
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  29315758 tgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 29315814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 17684768 - 17684712
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||    
T  17684768 tgttggaataagccctaatagccaatctatgttgaatgggtttggctttgtatcatg 17684712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 11651630 - 11651684
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatca 71  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  11651630 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatca 11651684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 309
Target Start/End: Complemental strand, 17850663 - 17850502
Alignment:
Q  147 taataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatcc 246  Q
    |||||||||||||| ||||| ||||   |||  |||||||||| |||  |||||||||||| | || |||||| | ||||| |||||||| ||| |||||    
T  17850663 taataaagtccctataatagctagtttgtttgttggaacattatgtaagacttaattgtgatatccaattaaaaacaaggacactattcttaaattatcc 17850564  T
Q  247 gtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
     |||||||||||| ||| ||||| | ||| |||| ||| ||| |||||||||| | |||||||    
T  17850563 atagtcaagcttt-ttgtgaagtcaaataacattcaagtatatagactattatatgggtagac 17850502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 301
Target Start/End: Original strand, 27925772 - 27925946
Alignment:
Q  132 tgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacat---taagtata--acttaattgtgagaccccattaaacataagg 226  Q
    |||||||||||||||||||||||||| |||||||  ||||   ||||| |||||||   ||||| |   ||||||| ||||||| |||||||||  |||     
T  27925772 tgttttgtttcaaaataataaagtccttagaataactagtatgtttaacggaacataattaagtgtgtgacttaatcgtgagactccattaaactaaaga 27925871  T
Q  227 aaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    ||| |||||| ||||||||  ||||||| |||||||  ||||||  ||| |||| ||||| | ||||||||||||    
T  27925872 aaattattcttaaagtatctctagtcaaactttatttggaagtggtatagcattgaagcacaaagactattatgt 27925946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 25537461 - 25537405
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||||    
T  25537461 tgttggattaagccctaatagccaatctatattgactgagtttggctttgtatcatg 25537405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 31258120 - 31258065
Alignment:
Q  116 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagt 171  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||    
T  31258120 atttctttattgcttttgttttgtttcaaaataataaagtctctaaaataattagt 31258065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 22259990 - 22259925
Alignment:
Q  125 ttgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaa 190  Q
    ||||||||||| |||| |||||||||||| |||||| ||||  |||||||||||||  ||||||||    
T  22259990 ttgattttgttatgttgcaaaataataaactccctaaaataactagtccatttaatataacattaa 22259925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 13359560 - 13359512
Alignment:
Q  25 taagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||| |||||||||||||||||||| |||||||||| ||||| ||||||    
T  13359560 taagtcctaatagccaatctatattcattgggtttgactttgtatcatg 13359512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 16566611 - 16566563
Alignment:
Q  25 taagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||| ||||||| ||||| ||||| ||||||    
T  16566611 taagccctaatagccaatctatgttgattgagtttgactttgtatcatg 16566563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 189281 - 189221
Alignment:
Q  16 atgttggaataagccctaatagccaatcta---tattgattgggtttggctttgcatcatg 73  Q
    |||||||| ||||||||||||  |||||||   ||||||||||||||||||||| ||||||    
T  189281 atgttggagtaagccctaataatcaatctagtatattgattgggtttggctttgtatcatg 189221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 18252030 - 18252230
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18252030 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 18252129  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18252130 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 18252229  T
Q  309 c 309  Q
    |    
T  18252230 c 18252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 18532721 - 18532521
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  18532721 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagttcgtttaatggaacattaagtataacttaattgtgag 18532622  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  18532621 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtagataga 18532522  T
Q  309 c 309  Q
    |    
T  18532521 c 18532521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 27131616 - 27131416
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27131616 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27131517  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  27131516 accccattaaacataaggaaactattctcaaagtatttgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtaga 27131417  T
Q  309 c 309  Q
    |    
T  27131416 c 27131416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 21171438 - 21171240
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  21171438 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttcatggaacattaaatataacttaattgtgagac 21171339  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  21171338 cccgttgaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtgggtagac 21171240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 27310782 - 27310584
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27310782 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 27310683  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    | | || ||||||||||||||||||| |||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||    
T  27310682 cacgttgaacataaggaaactattcttaaagtatcagtagtcaagctttattgagaagtggaatatcattaaagcatagagactattatgtgggtagac 27310584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 16359240 - 16359042
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  16359240 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagaataacttaattgtgagac 16359141  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||||||||||||||| |||||| || |||||||||||||||||||| ||  ||||||||||||||||||||||||||||| |||||||    
T  16359140 cccgttaaacataaggaaactattcttaaagtaaccctagtcaagctttattgagaaatggaatatcattaaagcatagagactattatgtgggtagac 16359042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 115 - 301
Target Start/End: Complemental strand, 36816834 - 36816648
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||||||||| ||||||||||||| ||     
T  36816834 catttctttattgattttgttttgtttcaaaataatgaagtccctagaatagttcgtctgtttaatggaacattaagtataaattaattgtgagactccg 36816735  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    ||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  36816734 ttaaacataaggacattattcttaaagtatccatagtcaagctttattgagaagtgggataccattaaagcatagagactattatgt 36816648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 3856126 - 3855926
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3856126 acaaggcatttctttgtttattttgttttgtttcaaaataacaaagtccctagaatagttagcccgtttaatggaacattaagtataacttaattgtgag 3856027  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||| | |||||| ||| |||  |||||||| |||||||| |||||| ||||| |||||||||| |||||||||| || ||||||    
T  3856026 accccattaaacataaggacattattcttaaaatatttgtagtcaaactttattgtgaagtgggatattattaaagcatggagactattacgtgggtaga 3855927  T
Q  309 c 309  Q
    |    
T  3855926 c 3855926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 109 - 301
Target Start/End: Complemental strand, 22657429 - 22657236
Alignment:
Q  109 acaaggcatttctttattgatttt-gttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtga 207  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  22657429 acaagacatttctttattgatttttgttttgtttcaaaataataaagttcctagaatagttagtctgtttaatggaacattaaatataacttaattgtga 22657330  T
Q  208 gaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    |||||| ||||||||||||| || ||||| ||||| ||  |||||||||||||||  ||| |||||||||||||||||||||||||||| ||||    
T  22657329 gacccctttaaacataaggacacaattcttaaagtgtctctagtcaagctttattctgaaatgagatatcattaaagcatagagactatcatgt 22657236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 27277756 - 27277564
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| |||| ||| | ||||||| | |||| ||      
T  27277756 catttctttgttgtttttgttttgtttcaaaataataacgtccctagaataattagtccatttaacggagcatt-agtgtgacttaatcgcgaga-cctt 27277659  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||| |  || || | |||||| |||||||||||||||| ||||||||| |||  | |||| ||||||||||||||||||||||||| |||||||    
T  27277658 ttaaccgaaatgacattattcttaaagtatccgtagtcaggctttattgtgaaaagggataacattaaagcatagagactattatgtgggtagac 27277564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 301
Target Start/End: Complemental strand, 12006712 - 12006554
Alignment:
Q  143 aaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagt 242  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||| |  |||||| |||||||||||| ||||||||||| | |||| | |||      
T  12006712 aaaataataaagtccctagaatagttagtctatttaatggaatattaagtgtgccttaatcgtgagaccccatgaaacataaggacattattattaaaac 12006613  T
Q  243 atccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    || ||||||||||| ||| || |||| | |||| ||||||| | |||||| | ||||||    
T  12006612 attcgtagtcaagccttagtgtgaagagggataacattaaaacttagagattgttatgt 12006554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 18532816 - 18532757
Alignment:
Q  14 atatgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18532816 atatgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 18532757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 308
Target Start/End: Complemental strand, 12014457 - 12014292
Alignment:
Q  143 aaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagt 242  Q
    |||||||||||||| ||||||||  |||||| |||||||||| ||||||| ||| ||||| || ||| |||||||||||||| ||   |||||| |||      
T  12014457 aaaataataaagtcactagaatacatagtccgtttaatggaatattaagtgtaaattaatcgttagatcccattaaacataatgatgttattcttaaaac 12014358  T
Q  243 atccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||| |||||||| || |||| | ||||  |||||||| || |||| ||||||| ||||||    
T  12014357 atccgtagttaagctttagtgtgaagagggatacgattaaagcgtaaagaccattatgtgggtaga 12014292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 18251935 - 18251992
Alignment:
Q  16 atgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18251935 atgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 18251992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 27310877 - 27310821
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  27310877 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 27310821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 9918106 - 9917927
Alignment:
Q  121 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaac 220  Q
    |||||||||||||||||||| ||||||||||||||| ||       |||||   |||||| |||||||||||||||||| ||   ||||  ||||||||     
T  9918106 tttattgattttgttttgttacaaaataataaagtcactt------ttagtttgtttaatcgaacattaagtataacttgatcacgaga-tccattaaat 9918014  T
Q  221 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtag 307  Q
    ||||||| | |||||| ||| ||||  |||| |||||||||||  ||||| |||| |||| ||||||||||| || ||||| |||||    
T  9918013 ataaggacattattcttaaaatatctatagttaagctttattgttaagtgggatagcattgaagcatagagaatactatgtcggtag 9917927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 16359336 - 16359280
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||||||||||||||||||||||| || |||| ||||||    
T  16359336 tgttggagtaagccctaatagccaatctatattgattgggttaggatttgtatcatg 16359280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 21171535 - 21171479
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| ||||| |||||||||||||||||| ||||| ||||||||||| ||||||    
T  21171535 tgttggagtaagctctaatagccaatctatatggattgagtttggctttgtatcatg 21171479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 22657521 - 22657472
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttg 66  Q
    ||||||| |||||| ||||||||||| ||||||||||| |||||||||||    
T  22657521 tgttggagtaagccttaatagccaatatatattgattgagtttggctttg 22657472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 30720694 - 30720625
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaa 184  Q
    ||||| ||||||| |||| |||||||| ||||||||||||| ||| ||||| ||||| | ||||||||||    
T  30720694 catttttttattggttttattttgttttaaaataataaagttcctggaataattagttcgtttaatggaa 30720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 36816926 - 36816885
Alignment:
Q  25 taagccctaatagccaatctatattgattgggtttggctttg 66  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  36816926 taagccctaatattcaatctatattgattgggtttggctttg 36816885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 3856220 - 3856164
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| || |||||||||||||||| || ||||||||||||| ||||| ||||||    
T  3856220 tgttggagtaggccctaatagccaatccatcttgattgggtttgactttgtatcatg 3856164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 27131704 - 27131652
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||     ||||||||||||||| ||||||    
T  27131704 tgttggaataagccctaatagccaatctat----gttgggtttggctttgtatcatg 27131652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 3403248 - 3403325
Alignment:
Q  139 tttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccatt 216  Q
    ||||||| ||||||||||  || |||||||||||   ||||||||| ||||||| | |||||| ||||||||| ||||    
T  3403248 tttcaaagtaataaagtctataaaatagttagtctgattaatggaatattaagtgtgacttaaatgtgagaccacatt 3403325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 3443571 - 3443494
Alignment:
Q  139 tttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccatt 216  Q
    ||||||| ||||||||||  || |||||||||||   ||||||||| ||||||| | |||||| ||||||||| ||||    
T  3443571 tttcaaagtaataaagtctataaaatagttagtctgattaatggaatattaagtgtgacttaaatgtgagaccacatt 3443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 27277856 - 27277800
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||||||||||| || |||  ||||| ||||| ||||||    
T  27277856 tgttggagtaagccctaatagccaatctatgttaattatgtttgactttgtatcatg 27277800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 112 - 309
Target Start/End: Original strand, 13211305 - 13211502
Alignment:
Q  112 aggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13211305 aggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacc 13211404  T
Q  212 ccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13211405 ccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgagatatcattaaagcatagagactattatgtaggtagac 13211502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 6110064 - 6110264
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6110064 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 6110163  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  6110164 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 6110263  T
Q  309 c 309  Q
    |    
T  6110264 c 6110264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 10572799 - 10572599
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10572799 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10572700  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  10572699 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 10572600  T
Q  309 c 309  Q
    |    
T  10572599 c 10572599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 16482688 - 16482490
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16482688 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 16482589  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16482588 cccattaaacataaggaaactactctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 16482490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 17781319 - 17781125
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17781319 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 17781220  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17781219 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 17781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 15601091 - 15600891
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15601091 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 15600992  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  15600991 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 15600892  T
Q  309 c 309  Q
    |    
T  15600891 c 15600891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 15607636 - 15607436
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15607636 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 15607537  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  15607536 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 15607437  T
Q  309 c 309  Q
    |    
T  15607436 c 15607436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 10579556 - 10579362
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  10579556 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgttaaatggaacattaagtataacttaattgtgagacccca 10579457  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579456 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgagatatcattaaagcatagagactattatgtaggtagac 10579362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 18522665 - 18522863
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18522665 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18522764  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18522765 cccattaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcatttaagcatagagactattatgtaggtagac 18522863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 13248607 - 13248807
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13248607 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 13248706  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  13248707 accccattaaacataaggaaactattctcaaagtattcgtagtcaagctttgttgagaagtgggataacattaaagcatagagactattatgtaggtaga 13248806  T
Q  309 c 309  Q
    |    
T  13248807 c 13248807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 15357793 - 15357593
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  15357793 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgag 15357694  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  15357693 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtaggtaga 15357594  T
Q  309 c 309  Q
    |    
T  15357593 c 15357593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 18519980 - 18520175
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18519980 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18520079  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||||||||||||||| ||   |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18520080 cccgttaaacataaggaaactattcttaa---atccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 18520175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 109 - 295
Target Start/End: Original strand, 8490488 - 8490674
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  8490488 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 8490587  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagacta 295  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  8490588 accccattaaacataaggaaactattctcaaagtatctgtagtcaagctttgttgagaagtgggatatcattaaagcatagagacta 8490674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 19089946 - 19089752
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||     
T  19089946 catttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgagacccct 19089847  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  19089846 ttaaacataatgaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaatcatagagactattatgtaggtagac 19089752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 17200389 - 17200191
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  17200389 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgatac 17200290  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  17200289 ccctttaaacataatgaaactattcttaaagtatccgtagttaagctttattgagatgtgtgatatcattaaagcatagagactattatgtgggtagac 17200191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 109 - 270
Target Start/End: Complemental strand, 18640953 - 18640792
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640953 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 18640854  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640853 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 18640792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 128 - 309
Target Start/End: Complemental strand, 15342407 - 15342226
Alignment:
Q  128 attttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 227  Q
    ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15342407 attttgttttgtttcaaaataataaagtccctagaatagtttgttcgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 15342308  T
Q  228 aactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  15342307 acctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtaggtagac 15342226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 13516813 - 13517011
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  13516813 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttcatggaacattaagtataacttaattgtgagac 13516912  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||  ||||||||||||||| |||||||||||||| |||||||    
T  13516913 cccgttaaacataaggaaacgattcttaaagtatctgtagtcaagctttattgagaagtaggatatcattaaagcacagagactattatgtgggtagac 13517011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 32057101 - 32056907
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| ||||| |||||||     
T  32057101 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacatcaagtataactttattgtaagaccccg 32057002  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  32057001 ttaaacataaagaaactattcttaaagtgtccgtagtcaaactttattgagaagtgggatatcattaaagcatagagactattatgtgggtagac 32056907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 115 - 301
Target Start/End: Complemental strand, 1647726 - 1647536
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataa----cttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    ||||||||||||||    
T  1647726 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataattaacttaattgtgagac 1647627  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    ||| |||||||||||||||||||| | |||||||||||| |||||||||||||||||  | ||||| ||||||||||||||||||||||||    
T  1647626 cccgttaaacataaggaaactatttttaaagtatccgtaatcaagctttattgagaaaagggatataattaaagcatagagactattatgt 1647536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 109 - 301
Target Start/End: Original strand, 29924971 - 29925163
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  29924971 acaagacatttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgag 29925070  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    ||||||||||| ||||||| | |||||| ||| |||  ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  29925071 accccattaaatataaggacattattcttaaaatatatgtagtcaagctttattgtgaagtgagatatcattaaagcatggaggctattatgt 29925163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 109 - 301
Target Start/End: Original strand, 29974124 - 29974316
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  29974124 acaagacatttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgag 29974223  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    ||||||||||| ||||||| | |||||| ||| |||  ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  29974224 accccattaaatataaggacattattcttaaaatatatgtagtcaagctttattgtgaagtgagatatcattaaagcatggaggctattatgt 29974316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 111 - 297
Target Start/End: Original strand, 16200128 - 16200313
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  16200128 aaggcatttcttcgttg-ttttattttgtttcaaaataataaagtccttagaatagttagttcgtttaatggaacattatgtataacttaattgtgagac 16200226  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactatt 297  Q
    ||||||||||||||||| | |||||| ||||||| |||||||||| ||||||| |||||| |||||||||||||||| |||||||||    
T  16200227 cccattaaacataaggacattattcttaaagtattcgtagtcaagatttattgtgaagtgggatatcattaaagcatggagactatt 16200313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 111 - 297
Target Start/End: Original strand, 16200434 - 16200619
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  16200434 aaggcatttcttcgttg-ttttattttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattatgtataacttaattgtgagac 16200532  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactatt 297  Q
     ||| |||||||||||| | |||||| ||||||| |||||||||| ||||||| |||||| ||| ||||||||||||  ||||||||    
T  16200533 tccaataaacataaggacattattcttaaagtattcgtagtcaagatttattgtgaagtgggatgtcattaaagcatgaagactatt 16200619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 116 - 309
Target Start/End: Complemental strand, 24253589 - 24253395
Alignment:
Q  116 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgaga-cccca 214  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||| | || | ||| |||||||||||||||| ||||||| |||||| |||||    
T  24253589 atttctttattgattttgttttacttcaaaataataaagtccttagaatagctcgttcgtttgatggaacattaagtatgacttaatcgtgagatcccca 24253490  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    | ||||||||||| |||||||| |||||||  || |||||  |||||||  ||||||| || ||||||||||||||||||||||||| |||||||    
T  24253489 tcaaacataaggacactattcttaaagtatatgtggtcaaaatttattgtaaagtgaggtaacattaaagcatagagactattatgtcggtagac 24253395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 17136465 - 17136559
Alignment:
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  17136465 ttaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtgggtagac 17136559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 18534758 - 18534820
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18534758 aaggcatttctttattgattttgttttgtttcaaaataataaagtccatagaatagttagtcc 18534820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 6109972 - 6110028
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6109972 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 6110028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 8490396 - 8490452
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8490396 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 8490452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 13248515 - 13248571
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13248515 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 13248571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 13211211 - 13211267
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  13211211 tgttggaataagccctaatagccaatctatattgattgggtttggttttgtatcatg 13211267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 18641045 - 18640989
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  18641045 tgttggaataagccctaatagccaatctatattgattgtgtttggctttgtatcatg 18640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 10579653 - 10579604
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10579653 tgttggaataagccctaatagccaatctatattgattgggtttgactttg 10579604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 18510924 - 18510969
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18510924 aaggcatttctttattgattttgttttgtttcaaaataataaagtc 18510969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 17136137 - 17136193
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  17136137 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 17136193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 10572890 - 10572841
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttg 66  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  10572890 tgttggaataagccctaatagccaacctatattgattgggtttgactttg 10572841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 15607729 - 15607672
Alignment:
Q  17 tgttggaataagccctaatagccaatctata-ttgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||    
T  15607729 tgttggaataagccctaatagccaatctatattttattgggtttggctttgtatcatg 15607672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 17200483 - 17200434
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttg 66  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  17200483 tgttggagtaagccctaatagccaatctatgttgattgggtttggctttg 17200434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 15351293 - 15351237
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||| ||||||    
T  15351293 tgttggaataagccctaatagccaatctataatgattgattttggctttgtatcatg 15351237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 15357885 - 15357829
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||| ||||||    
T  15357885 tgttggaataagccctaatagccaatctataatgattgattttggctttgtatcatg 15357829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 16482782 - 16482727
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  16482782 tgttagaataagccctaata-ccaatctatattgattgggtttggctttgtatcatg 16482727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 18519885 - 18519941
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  18519885 tgttggagtaagtcctaatagccaatctatattgattgggtttggttttgtatcatg 18519941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 1647825 - 1647768
Alignment:
Q  16 atgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||||||| ||||||    
T  1647825 atgttggagtaagccctaatagctggtctatattgattgggtttggctttgtatcatg 1647768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 15601184 - 15601127
Alignment:
Q  17 tgttggaataagccctaatagccaatctata-ttgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||    
T  15601184 tgttggaataagccctaatagccaatctatattttattgggtttggatttgtatcatg 15601127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 13516719 - 13516775
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||||||||||| ||||||| |||||||| || ||||||    
T  13516719 tgttggagtaagccctaatagccaatctatgttgattgagtttggctgtgtatcatg 13516775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 17781414 - 17781370
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttgg 61  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||    
T  17781414 tgttggagtaagccctaatagccaatctatattgattgagtttgg 17781370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 19090041 - 19089997
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttgg 61  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||    
T  19090041 tgttggagtaagccctaatagccaatctatattgattgagtttgg 19089997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 32057200 - 32057144
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||| ||||| ||||||    
T  32057200 tgttggagtaagctctaatagccaatctatgttgattgggtttgactttgtatcatg 32057144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 18510829 - 18510885
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||  |||| ||||||    
T  18510829 tgttggagtaagccctaatatccaatctatattgattgagtttgattttgtatcatg 18510885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 18522570 - 18522626
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||  |||| ||||||    
T  18522570 tgttggagtaagccctaatatccaatctatattgattgagtttgattttgtatcatg 18522626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 18534671 - 18534719
Alignment:
Q  25 taagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||| |||||||||||||||| |||||| |||| ||||||    
T  18534671 taagccctaatagtcaatctatattgattgagtttggttttgtatcatg 18534719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 29924879 - 29924935
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| ||||||||||||| | |||||||||||||| ||||| | ||| ||||||    
T  29924879 tgttggagtaagccctaatagtcgatctatattgattgagtttgacattgtatcatg 29924935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 29974032 - 29974088
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| ||||||||||||| | |||||||||||||| ||||| | ||| ||||||    
T  29974032 tgttggagtaagccctaatagtcgatctatattgattgagtttgacattgtatcatg 29974088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 18288 - 18488
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18288 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaattgaacattaagtataacttaattgtgag 18387  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  18388 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 18487  T
Q  309 c 309  Q
    |    
T  18488 c 18488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 18196 - 18252
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18196 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 18252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 29327784 - 29327984
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  29327784 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgag 29327883  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29327884 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29327983  T
Q  309 c 309  Q
    |    
T  29327984 c 29327984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 11536269 - 11536069
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  11536269 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtacaacttaattgtgag 11536170  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11536169 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11536070  T
Q  309 c 309  Q
    |    
T  11536069 c 11536069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 11543187 - 11542987
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  11543187 acaatgcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtcag 11543088  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11543087 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11542988  T
Q  309 c 309  Q
    |    
T  11542987 c 11542987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 15152445 - 15152643
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15152445 aaggcatttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 15152544  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15152545 cccgttaaacatacggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 15152643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 15148144 - 15148342
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||||    
T  15148144 aaggcatttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttgattgaacattaagtataacttaattgtgagac 15148243  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15148244 cccgttaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 15148342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 18561009 - 18561207
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  18561009 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaactgtgagac 18561108  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  18561109 cccgttaaacattaggaaactattcttaaagtatctgtagtcaagctttattgagaggtgggatatcattaaagcatagagactattatgtgggtagac 18561207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 111 - 301
Target Start/End: Original strand, 12750828 - 12751018
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  12750828 aaggcatttctttattgattttgttttgtttcaaagtaataaagtccctagaatagttagtccgtttaatgaaacattaagtataacttaattgtgagac 12750927  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    | | |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  12750928 ctcgttaaacataaagaaactattcttaaagtatccgtagtcaagctttattgagaagttggatatcattaaagcatagagactattatgt 12751018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 115 - 309
Target Start/End: Original strand, 12738542 - 12738736
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||       
T  12738542 catttctttattgattttattttgtttcaaaataataaagtccctagaatagttagtttgtttaatgaaacattaattataacttaattgtgagaccttg 12738641  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  12738642 ttaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagac 12738736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 111 - 301
Target Start/End: Complemental strand, 18258047 - 18257857
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||||||||    
T  18258047 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtctgtttaatggaacattaagtatgacttaattgtgagac 18257948  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||| ||| |||  ||||  |||| || ||| ||||| ||||||||||||    
T  18257947 cccattaaacacaaggacattattcttaaagtatccgtagtcaagtttttttgttaagtaggataacaataatgcataaagactattatgt 18257857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 115 - 297
Target Start/End: Original strand, 13392157 - 13392338
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||||||| | ||||||   |||||||| |||||||| | ||||||| |||||| ||||    
T  13392157 catttctttgttgactttgttttgtttcaaaataataaagttcctagaacaattagtctgcttaatggagcattaagtgtgacttaatcgtgaga-ccca 13392255  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactatt 297  Q
    |||||   ||||| | |||||| ||||||||  ||||||| |||||||| |||  | |||| ||||||| |||||||||||||    
T  13392256 ttaaatgaaaggacattattcttaaagtatcaatagtcaaactttattgtgaaaagggataacattaaaacatagagactatt 13392338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 301
Target Start/End: Original strand, 2364917 - 2365086
Alignment:
Q  131 ttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaac 230  Q
    ||||| |||||||||||||||||||| |||||||| ||||||  | |||||||||||||||| |  |||||| |||||| ||||||||||  || || |     
T  2364917 ttgttatgtttcaaaataataaagtctctagaataattagtctttctaatggaacattaagtgtggcttaatcgtgagaacccattaaactaaatgacat 2365016  T
Q  231 tattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    |||||| ||| ||| ||||||||| | |||||| ||| ||||||| ||||||| |||||||||||| ||||    
T  2365017 tattcttaaaatattcgtagtcaa-ccttattgtgaaatgagataacattaaaacatagagactatcatgt 2365086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 142 - 301
Target Start/End: Original strand, 7396221 - 7396381
Alignment:
Q  142 caaaataataaagtccctagaatagttagtccatttaa-tggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaa 240  Q
    |||||||| || ||| |||||||||||||| ||||||| ||||||||||||||| |||||||  |||||||| |||||||||||| ||| |||||| |||    
T  7396221 caaaataaaaatgtcgctagaatagttagttcatttaaatggaacattaagtatgacttaatcttgagaccctattaaacataagaaaattattcttaaa 7396320  T
Q  241 gtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
      ||  |||||||||| ||| || ||| |  |||   ||||||||||||||||||||||||    
T  7396321 acatatgtagtcaagccttagtgtgaaatacgatgatattaaagcatagagactattatgt 7396381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 299
Target Start/End: Original strand, 39111819 - 39112002
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||||  ||||| ||||||| |||||||||||  |||||||    ||||  |     
T  39111819 catttctttattaattttgttttatttcaaaa-aataaagtccctagaatagcgagtccgtttaatgaaacattaagtacgacttaatcacaagacatct 39111917  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattat 299  Q
    ||||||||||||| ||||||   ||| ||| |  |||| |||||||||| |||  || ||| |||||||  ||||||||||||||    
T  39111918 ttaaacataaggacactatttcaaaaatattcacagtccagctttattgtgaaacgaaataacattaaaatatagagactattat 39112002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 12738441 - 12738499
Alignment:
Q  15 tatgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12738441 tatgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 12738499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 2653332 - 2653275
Alignment:
Q  16 atgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  2653332 atgttggaataagccctaatagccaatctatattgattgggattggctttgtatcatg 2653275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 11543279 - 11543223
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  11543279 tgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 11543223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 11536361 - 11536305
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  11536361 tgttggaataagccctaatagccactctatattgattggttttggctttgtatcatg 11536305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 12750733 - 12750789
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  12750733 tgttggagtaagccctaatagctaatctatattgattgggtttggctttgtatcatg 12750789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 15152350 - 15152406
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  15152350 tgttggagtaagccctaatagccaatctatattgattgggtttggttttgtatcatg 15152406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 29327690 - 29327745
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcat 72  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  29327690 tgttggagtaagccctaatagccaatctatattgattgggtttggttttgtatcat 29327745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 15148049 - 15148105
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| |||| ||||||    
T  15148049 tgttggagtaagccctaatagccaatctatattaattgggtttggttttgtatcatg 15148105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 3132748 - 3132791
Alignment:
Q  183 aacattaagtataacttaattgtgagaccccattaaacataagg 226  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  3132748 aacattaagtgtaacttaattgtgagaccccattaaacataagg 3132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 13392030 - 13392085
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcat 72  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||| ||||| |||||    
T  13392030 tgttggagtaagccctaatatccaatctatattgattgtgtttgactttgtatcat 13392085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 10234179 - 10234244
Alignment:
Q  159 tagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataa 224  Q
    ||||||||||||||| ||||||| | |||||| |||||||||||  |||||  |||||||||||||    
T  10234179 tagaatagttagtccgtttaatgaaccattaaatataacttaatcatgagattccattaaacataa 10234244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 2653239 - 2653207
Alignment:
Q  109 acaaggcatttctttattgattttgttttgttt 141  Q
    |||||||||||||||||||||||||||||||||    
T  2653239 acaaggcatttctttattgattttgttttgttt 2653207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 18258143 - 18258087
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||| |||||||||||| ||||||||| |||||| ||| ||||||    
T  18258143 tgttggagtaagccctgatagccaatctagattgattggttttggccttgtatcatg 18258087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 7141 - 6941
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  7141 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaactgtgag 7042  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7041 accctattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 6942  T
Q  309 c 309  Q
    |    
T  6941 c 6941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 14157 - 13957
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  14157 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctacaatagttagtccgtttaatggaacattaagtataacttaactgtgag 14058  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  14057 accccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtaga 13958  T
Q  309 c 309  Q
    |    
T  13957 c 13957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 7233 - 7177
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  7233 tgttggaataagccctaatagccaatctatattgattgagtttggttttgtatcatg 7177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 14249 - 14193
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  14249 tgttggaataagccctaatagccaatctatattgattgagtttggttttgtatcatg 14193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 21940665 - 21940865
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21940665 acaatgcatttctttattgattttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 21940764  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21940765 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 21940864  T
Q  309 c 309  Q
    |    
T  21940865 c 21940865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 22171491 - 22171687
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  22171491 aaggcatttccttattgattttgttttatttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 22171590  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  22171591 cccattaaacata--gaaactattctcaaagtatccgtagtcaagctttattgagaagtggaatatcattaaagcatagagactattatgtaggtagac 22171687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 115 - 309
Target Start/End: Original strand, 24642655 - 24642849
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||     
T  24642655 catttctttattgattttgttttgtttcaaaatcataaagtccctagaattgttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 24642754  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  24642755 ttaaacataaggaaactattcttaaagtattcgtagtcaagctttattgagaagtgagatatcattaaagtatagagactattatgtgggtagac 24642849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 28554885 - 28555083
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    |||||||||||||||||||||||||| |||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28554885 aaggcatttctttattgattttgtttagtttcaaaataataaaatacctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 28554984  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28554985 cccattaaacataatgaaactattctaaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtagac 28555083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 115 - 308
Target Start/End: Original strand, 6094129 - 6094322
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  6094129 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 6094228  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  6094229 ttaaacataaggaaactatttttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatatgggtaga 6094322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 24636860 - 24636987
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  24636860 catttctttcttgattttgttttgtttcaaaataataaagtccctagaatagttagtccttttaatggaacattaagtataacttaattgtgagaccccg 24636959  T
Q  215 ttaaacataaggaaactattctcaaagt 242  Q
    |||||||||||||||||||||| |||||    
T  24636960 ttaaacataaggaaactattcttaaagt 24636987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 22070105 - 22070164
Alignment:
Q  14 atatgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  22070105 atatgttggaataagccctaatagccaatctatattgattgggtttggttttgtatcatg 22070164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 21940573 - 21940629
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  21940573 tgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 21940629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 309
Target Start/End: Complemental strand, 38232570 - 38232384
Alignment:
Q  121 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaac 220  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||||||||  ||||||  |   ||| ||||||||||||  ||| || |||||||||    
T  38232570 tttattgattttgttttatttcaaaataataaa-tctctagaatagttagtctgtttaataaatttttaggtataacttaatcatgacactccattaaac 38232472  T
Q  221 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
     |||  | | |||||| |||||||  |||||||| ||||||||  ||||||||||   |||||||||| | |||||| ||| |||||||    
T  38232471 gtaa-aatagtattcttaaagtatttgtagtcaaactttattgtaaagtgagatagtcttaaagcataaaaactattttgtgggtagac 38232384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 284
Target Start/End: Original strand, 2375027 - 2375179
Alignment:
Q  130 tttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaa 229  Q
    |||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||||| |  || |||||||  ||| | ||||||||||||| | | |    
T  2375027 tttgttttgtttcaaaataataaactccctataataattagtcaatttaatggaacatttatgatgacttaatcatga-aacccattaaacatacgaata 2375125  T
Q  230 ctattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaag 284  Q
     |||| | |||||||  ||||||| | ||||||| | ||||||||| ||||||||    
T  2375126 ttatttttaaagtatatgtagtcacgatttattgcg-agtgagataacattaaag 2375179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 139 - 300
Target Start/End: Complemental strand, 32873019 - 32872857
Alignment:
Q  139 tttcaaaataataaagtccctagaatagttagtccattta-atggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctc 237  Q
    ||||||||||||||||||| || |||||||  |||||||| || ||||||||||||| |||||||||||||| | |||| || | |  || | || | |     
T  32873019 tttcaaaataataaagtccttataatagttcatccatttatatagaacattaagtatgacttaattgtgagatctcattgaaaagagtgacaatactatt 32872920  T
Q  238 aaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatg 300  Q
    ||| |||  ||||| ||| ||||||| |||||| |||| ||| ||||||||||||||||||||    
T  32872919 aaaatatttgtagttaagatttattgtgaagtgggataacatcaaagcatagagactattatg 32872857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 24642556 - 24642605
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttg 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24642556 tgttggagtaagccctaatagccaatctatattgattgggtttggctttg 24642605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 6094031 - 6094087
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  6094031 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 6094087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 22171396 - 22171452
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  22171396 tgttggaataagccctaatagccaatctatattgattgggtttgattttgtatcatg 22171452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 28554791 - 28554847
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  28554791 tgttggagtaagccctaatagccaatctttgttgattgggtttggctttgtatcatg 28554847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 10920234 - 10920297
Alignment:
Q  147 taataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||| | ||||||||| ||||||  |||||||||||||||||||| | ||||| |||||||    
T  10920234 taataaaattcctagaataattagtctgtttaatggaacattaagtatgagttaatcgtgagac 10920297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 24636605 - 24636642
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattg 54  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  24636605 tgttggagtaagccataatagccaatctatattgattg 24636642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 24695673 - 24695473
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24695673 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 24695574  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24695573 accccattaaacataatgaaactattctaaaagtatccgtagtcaagctttattgagaagtgagatatcaataaagcatagagactattatgtaggtaga 24695474  T
Q  309 c 309  Q
    |    
T  24695473 c 24695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 18570070 - 18569870
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  18570070 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaattgaacattaagtataacttaattgtgag 18569971  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| ||||||    
T  18569970 accccgttaaacataaggaaactactcttaaagtatccgtagtcaagctttattgagaagtggaatatcattaaagcataaagactattatgttggtaga 18569871  T
Q  309 c 309  Q
    |    
T  18569870 c 18569870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 19714703 - 19714505
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19714703 aaggcatttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 19714604  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| |||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||    
T  19714603 cccgttaaacataaggaatctattcttaaaatatccgaagtcaagctttattgagaagtaggatatcattaaagcatagagactattatgtgggtagac 19714505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 19707419 - 19707225
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||     
T  19707419 catttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgagaccccg 19707320  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||    
T  19707319 ttaaacataaggaatctattcttaaaatatccgaagtcaagctttattgagaagtaggatatcattaaagcatagagactattatgtgggtagac 19707225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 114 - 297
Target Start/End: Complemental strand, 27347679 - 27347497
Alignment:
Q  114 gcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccc 213  Q
    |||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||| ||  ||||||||| |||||||| | ||||||| |||||| |||    
T  27347679 gcatttctttgttgattttgttttgattcaaaataataaagtccttagaataattaatctgtttaatggagcattaagtgtgacttaatcgtgaga-ccc 27347581  T
Q  214 attaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactatt 297  Q
    |||||||  ||||| | |||||| |||||||  ||||||||||||||||| |||  | |||| |||||||||||||||||||||    
T  27347580 attaaacgaaaggacattattcttaaagtatatgtagtcaagctttattgtgaaaagggataacattaaagcatagagactatt 27347497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 115 - 301
Target Start/End: Complemental strand, 22547217 - 22547031
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    ||||| |||||| |||||||||| ||| |||||||||||  | ||| |||||||||||  |||||||||||||||||||||||||||| |||||| | ||    
T  22547217 catttatttattcattttgttttattttaaaataataaaaccgctataatagttagtcggtttaatggaacattaagtataacttaatcgtgagatctca 22547118  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
    ||||| ||| ||| | |||| | ||||||| || |||||| |||||||| ||||||||||| |||||||  ||||||||||||||||    
T  22547117 ttaaatatatggacattatttttaaagtattcgcagtcaaactttattgtgaagtgagataacattaaaatatagagactattatgt 22547031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 39537962 - 39538071
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| |||||||||| ||||||||||||||||||||||  | |||||| |||||||||| || | ||||||||||||||||||||||||||||||||||    
T  39537962 acaagccatttctttaatgattttgttttgtttcaaaatggttaagtccttagaatagttggttcgtttaatggaacattaagtataacttaattgtgag 39538061  T
Q  209 accccattaa 218  Q
    ||| ||||||    
T  39538062 acctcattaa 39538071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 113 - 294
Target Start/End: Complemental strand, 17285935 - 17285754
Alignment:
Q  113 ggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccc 212  Q
    ||||||| ||||||||||||||| ||||||||||||||||  |||  |||||||||||||  |||||||||||||||||| | ||||||| |||| ||||    
T  17285935 ggcatttatttattgattttgttatgtttcaaaataataatctccagagaatagttagtctgtttaatggaacattaagtgtgacttaatcgtgaaaccc 17285836  T
Q  213 cattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagact 294  Q
     | |||||  || || | |||||| ||||||| | ||||| | |||||||| ||| || ||||  ||||||||||| |||||    
T  17285835 tagtaaactaaatgacattattcttaaagtattcatagtcgatctttattgtgaattgggatagtattaaagcatatagact 17285754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 31886537 - 31886640
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||| |||||| |||||  ||||||| ||||||| |||    
T  31886537 catttctttagtgattttgttttgtttcaaattaataaagtccttagaataattagttcatttaattgaacatcaagtacgacttaatcgtgagactcca 31886636  T
Q  215 ttaa 218  Q
    ||||    
T  31886637 ttaa 31886640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 174 - 309
Target Start/End: Complemental strand, 18807176 - 18807041
Alignment:
Q  174 atttaatggaacattaagtataacttaattgtgagaccccattaaacataa-ggaaactattctcaaagtatccgtagtcaagctttattgagaagtgag 272  Q
    ||||||||||||||||||| | ||||||| ||||||| |||||||| |||| ||| | |||||| ||||||||  ||||||||| |||||| ||||| ||    
T  18807176 atttaatggaacattaagtgtgacttaatcgtgagacaccattaaa-ataatggacattattcttaaagtatctatagtcaagcgttattgtgaagtaag 18807078  T
Q  273 atatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| || |||||||||||||||||||||  |||||||    
T  18807077 ataacaataaagcatagagactattatgcgggtagac 18807041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 24695765 - 24695709
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24695765 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 24695709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 294
Target Start/End: Complemental strand, 17299088 - 17298907
Alignment:
Q  113 ggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccc 212  Q
    ||||||| ||||||||||||||| |||||  |||||||||  |||  ||||||||||||||  |||||||||||||||||   ||||||| |||| ||||    
T  17299088 ggcatttatttattgattttgttatgtttataaataataatatccagagaatagttagtccgattaatggaacattaagtgcgacttaatcgtgaaaccc 17298989  T
Q  213 cattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagact 294  Q
     | |||||  || || | |||||| ||||||| | ||||| | ||||||||  ||||| ||||  ||||||||||| |||||    
T  17298988 tagtaaactaaatgacattattcttaaagtattcatagtcgatctttattgttaagtgggatagtattaaagcatatagact 17298907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 19714798 - 19714742
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19714798 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 19714742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 309
Target Start/End: Original strand, 39538701 - 39538788
Alignment:
Q  222 taaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    |||||| |||||||| ||| ||||| |||| ||||||||||| |||||| ||||||||||||||||  |||||||||||| |||||||    
T  39538701 taaggacactattcttaaaatatccatagttaagctttattgtgaagtgggatatcattaaagcatgaagactattatgtgggtagac 39538788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 19707518 - 19707462
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  19707518 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 19707462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 27347778 - 27347722
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  27347778 tgttggagtaagccctaatagccaatctatattgattgcgtttggctttgtatcatg 27347722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 33477479 - 33477389
Alignment:
Q  135 tttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataag 225  Q
    ||||||||||||||||||||||| || ||||||||| |   |||||||| |||||||| | |  |||| |||||||| |||||| ||||||    
T  33477479 tttgtttcaaaataataaagtccttacaatagttaggctgattaatggatcattaagtgtgatctaatcgtgagacctcattaatcataag 33477389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 18570156 - 18570108
Alignment:
Q  25 taagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||| |||||||| |||||||||| |||||||||||||||| ||||||    
T  18570156 taagctctaatagctaatctatattaattgggtttggctttgtatcatg 18570108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 39537870 - 39537925
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcat 72  Q
    ||||||| |||||||||||||||||||||| |||| || |||| |||||| |||||    
T  39537870 tgttggattaagccctaatagccaatctatgttgactgagtttagctttgtatcat 39537925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 109 - 305
Target Start/End: Complemental strand, 21330455 - 21330259
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21330455 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 21330356  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21330355 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggt 21330259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 18796506 - 18796706
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    |||||| |||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18796506 acaaggaatttatttgtttattttgttttgtttcaaaataacaaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 18796605  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    ||| | || |||||||||| | |||||| ||| |||| ||||||||||||||||| ||||||  ||||||||||||||| ||||||||||||| ||||||    
T  18796606 acctcttttaacataaggatattattcttaaattatctgtagtcaagctttattgtgaagtggtatatcattaaagcattgagactattatgtgggtaga 18796705  T
Q  309 c 309  Q
    |    
T  18796706 c 18796706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 111 - 307
Target Start/End: Original strand, 18619807 - 18620002
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||| |||||||| | |||||||| |||||     
T  18619807 aaggaatttctttgttgattttgttttgtttcaaaataataaagtccctataataattagtctgtttaatggagcattaagtgtgacttaattatgaga- 18619905  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtag 307  Q
    ||||||||||| ||||| | |||||| |||||||| || ||||| |||||||| |||  | ||||  ||||||||||| |||||||||||| |||||    
T  18619906 cccattaaacaaaaggatattattcttaaagtatctgtggtcaaactttattgtgaaaagggataatattaaagcatatagactattatgtgggtag 18620002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 19692737 - 19692598
Alignment:
Q  115 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 214  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||  | |||||||  ||||| | ||    
T  19692737 catttctttattgattttgttttgtttcaaaataatgaagtccctagaataattagtctgtttaatggaacattaagcctgacttaatcatgagatctca 19692638  T
Q  215 ttaaacataaggaaactattctcaaagtatccgtagtcaa 254  Q
    ||||||  ||||||| |||||| ||||||||| |||||||    
T  19692637 ttaaactaaaggaaattattcttaaagtatccttagtcaa 19692598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 20977958 - 20978084
Alignment:
Q  175 tttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagat 274  Q
    ||||||||||||||||| |||| |||||  ||||| ||||||||| ||||||||| |||||| |||  |||||||||||||||||| || ||||||||||    
T  20977958 tttaatggaacattaagaataatttaatcatgagatcccattaaaaataaggaaattattcttaaaacatccgtagtcaagctttaatgtgaagtgagat 20978057  T
Q  275 atcattaaagcatagagactattatgt 301  Q
    |||| ||||||||||||||||||||||    
T  20978058 atcactaaagcatagagactattatgt 20978084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 21330551 - 21330493
Alignment:
Q  15 tatgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21330551 tatgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 21330493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 143 - 309
Target Start/End: Original strand, 36270199 - 36270366
Alignment:
Q  143 aaaataataaagtccctagaatagttagtcca-tttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaag 241  Q
    |||||||||||||||||||||||||||||  | || |||| ||  |||||| | ||||||| |||||||  ||||||||| || || |||||||| |||     
T  36270199 aaaataataaagtccctagaatagttagtttacttaaatgaaatgttaagtgtgacttaatcgtgagacatcattaaacacaatgacactattcttaaaa 36270298  T
Q  242 tatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
     ||||||| |||||||||| || |||| | |||| |||||||| ||| |||||||| ||| |||||||    
T  36270299 catccgtaatcaagctttagtgtgaagagggataacattaaagtataaagactattgtgtgggtagac 36270366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 301
Target Start/End: Original strand, 18822115 - 18822275
Alignment:
Q  143 aaaataataaagtccctagaatagttagtccatttaa-tggaaca-ttaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaa 240  Q
    ||||||||||||||  |||||| |||||| | ||||| ||||| | |||||| |  |||||| ||||||| |||||||||| ||||| |||||||| |||    
T  18822115 aaaataataaagtctatagaattgttagttcgtttaaatggaaaaattaagtgtggcttaatcgtgagacaccattaaacacaaggacactattcttaaa 18822214  T
Q  241 gtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 301  Q
      ||  ||| |||||||||| |  |||||| ||||||||||||||| | ||| ||||||||    
T  18822215 acatatgtaatcaagctttagtttgaagtgggatatcattaaagcagatagattattatgt 18822275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 19692829 - 19692773
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||| ||||||||||||| |||| ||| ||||||| |||| ||||||    
T  19692829 tgttggagtaagccttaatagccaatctgtatttattaggtttggttttgtatcatg 19692773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 7107 - 7307
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  7107 acaaggtatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatagaacattaagtataacttaattgtgag 7206  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7207 accccattaaacataatgaaactattctaaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 7306  T
Q  309 c 309  Q
    |    
T  7307 c 7307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 7015 - 7071
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7015 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 7071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 26197 - 25997
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26197 acaagacatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccatttaatggaacattaaatataacttaattgtgag 26098  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  26097 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgaaaagtgggatatcattaaagcatagcgactattatgtaggtaga 25998  T
Q  309 c 309  Q
    |    
T  25997 c 25997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 26286 - 26231
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcat 72  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  26286 tgttggaataagccctaatagtcaatctatattgattgggtttggctttgtatcat 26231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 109 - 309
Target Start/End: Original strand, 993 - 1193
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  993 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctaaaatagttagtccgtttaatgaaacattaagtataacttaattgtgag 1092  T
Q  209 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 308  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1093 accccattaaacataaagaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 1192  T
Q  309 c 309  Q
    |    
T  1193 c 1193  T

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Target: scaffold0657; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 900 - 957
Alignment:
Q  16 atgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  900 atgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 5531 - 5729
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5531 aaggcatttctttattgatttatttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 5630  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 309  Q
    ||| ||||||||||||||| |||||| |||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  5631 cccgttaaacataaggaaattattcttaaagtatatgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtgggtagac 5729  T

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Target: scaffold0063; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 5444 - 5492
Alignment:
Q  25 taagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  5444 taagccctaatagccaatctatattgtttgggtttggctttgtatcatg 5492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 111 - 292
Target Start/End: Complemental strand, 230545 - 230365
Alignment:
Q  111 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  230545 aaggcatttctttattgattttgttttgtttcaaaataataaagttcttataatagttagtccgtttaatggaacattaagtataacttaattgtgagac 230446  T
Q  211 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagaga 292  Q
    ||| |||||||||||||||| ||||| |||||||  ||||||||| |||||||||||||| |||||||||||||||||||||    
T  230445 ccc-ttaaacataaggaaaccattcttaaagtatttgtagtcaagatttattgagaagtgggatatcattaaagcatagaga 230365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 230640 - 230584
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  230640 tgttggagtaagcaataatagccaatctatattgattgggtttggctttgtatcatg 230584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 8510 - 8446
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 173  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8510 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 8446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 8602 - 8546
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  8602 tgttggaataagccctaatagccaatctatattgattgggttcggctttgtatcatg 8546  T

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Target: scaffold0203 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 23825 - 23769
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23825 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 23769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0326 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 16523 - 16571
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggcttt 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16523 tgttggaataagccctaatagccaatctatattgattgggtttggcttt 16571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0326; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 16615 - 16648
Alignment:
Q  109 acaaggcatttctttattgattttgttttgtttc 142  Q
    |||||||||||||||||||||||||||||| |||    
T  16615 acaaggcatttctttattgattttgttttgnttc 16648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0705 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 97 - 41
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||| ||||||    
T  97 tgttggaataagccctaatagccaatctataatgattgattttggctttgtatcatg 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 8944 - 9000
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||    
T  8944 tgttggaataagcccaaatagccaatctatgttgaatgggtttggctttgtatcatg 9000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 37 - 1
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgatt 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  37 tgttggaataagccctaatagccaatctatattgatt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 10256 - 10202
Alignment:
Q  19 ttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 73  Q
    ||||| ||||| |||||||||||||||||||||||| ||||| ||||| ||||||    
T  10256 ttggagtaagctctaatagccaatctatattgattgagtttgactttgtatcatg 10202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Complemental strand, 10158 - 10127
Alignment:
Q  128 attttgttttgtttcaaaataataaagtccct 159  Q
    ||||||||||||||||||||||||||||||||    
T  10158 attttgttttgtttcaaaataataaagtccct 10127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 5878 - 5927
Alignment:
Q  17 tgttggaataagccctaatagccaatctatattgattgggtttggctttg 66  Q
    ||||||| |||| | ||||||||||||||||||||||| ||||| |||||    
T  5878 tgttggagtaagtcataatagccaatctatattgattgagtttgactttg 5927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 92194 - 92267
Alignment:
Q  138 gtttcaaaataataaagtccctagaatagttagtccatttaa-tggaacattaagtataacttaattgtgagac 210  Q
    |||| ||| |||||||||| ||||||||  ||||   ||||| ||||||||||||||||||||||| |||||||    
T  92194 gttttaaagtaataaagtctctagaatatctagttattttaaatggaacattaagtataacttaatcgtgagac 92267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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