View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20525_high_26 (Length: 306)
Name: NF20525_high_26
Description: NF20525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20525_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3017240 - 3016965
Alignment:
| Q |
1 |
ccttacaagtcagttttgtggggtcaagttcaacgtaaaatctaagaaatgcaaagataaaataccgaagctataatgctaaacctgtagtcatgtatgc |
100 |
Q |
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| T |
3017240 |
ccttacaagtcagttttgtggggtcaagttcaacgtaaaatctaagaaatgcaaagataaaataccgaagctataatgctagacctgtagtcatgtatgc |
3017141 |
T |
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| Q |
101 |
aacagttcttaccttattgtcttcaagaaaagccgaaacatctccaaaatgagggcatcacattcaagatccagcattaccacacataacctgacttttg |
200 |
Q |
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| T |
3017140 |
aacagttcttaccttattgtcttcaagaaaagccgaaacatctccaaaatgagggcatcacattcaagatccagcattaccacacataacctgacttttg |
3017041 |
T |
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| Q |
201 |
cgactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatgtagattttcaaaagaagatac |
276 |
Q |
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| T |
3017040 |
caactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatgtagattttcaaaagaagatac |
3016965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 110 - 276
Target Start/End: Complemental strand, 3032867 - 3032701
Alignment:
| Q |
110 |
taccttattgtcttcaagaaaagccgaaacatctccaaaatgagggcatcacattcaagatccagcattaccacacataacctgacttttgcgactgttt |
209 |
Q |
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| T |
3032867 |
taccttattgtcttcaagaaatgctgaaacatctccaaaatgagggcatcgcattcaagatccagcattaccacacatgacctgacttttgcaactgttt |
3032768 |
T |
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| Q |
210 |
caaggattgaaatccttgtttcataccaacggcttgacatatcatgtagattttcaaaagaagatac |
276 |
Q |
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| T |
3032767 |
cgaggattaaagtcctctttgagtaccatcggcttgacttatcatgtagattttcaaatgaagatac |
3032701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 276
Target Start/End: Original strand, 48969855 - 48970020
Alignment:
| Q |
111 |
accttattgtcttcaagaaaagccgaaacatctccaaaatgagggcatcacattcaagatccagcattaccacacataacctgacttttgcgactgtttc |
210 |
Q |
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||||||| |||||||| ||| || |||||||||||||||| || |||||||| ||||| |||| ||||||||||||| | ||||| ||||| || ||||| |
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| T |
48969855 |
accttatggtcttcaaaaaatgctgaaacatctccaaaatcagcgcatcacaatcaaggtccaacattaccacacatgatctgacctttgcaacagtttc |
48969954 |
T |
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| Q |
211 |
aaggattgaaatccttgtttcataccaacggcttgacatatcatgtagattttcaaaagaagatac |
276 |
Q |
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| T |
48969955 |
gaggactattctcctattctcatacgatcggcttaacttatcatgtagattttcaaatgaagatac |
48970020 |
T |
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