View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20525_high_8 (Length: 380)
Name: NF20525_high_8
Description: NF20525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20525_high_8 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Complemental strand, 41089184 - 41088815
Alignment:
| Q |
8 |
caccacagataacgaaagaccaat---aaggtagttttaacattatgcatgagcatgactagaaccataatggtaagggataagctatgatttagattcg |
104 |
Q |
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| T |
41089184 |
caccatagataacgaaagaccaatctaaaggtagttttaacattatgcatga------ctagaaccataatggtaagggataagctatgatttagattcg |
41089091 |
T |
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| Q |
105 |
ttaaaatgccatttcctgtcaagaaaccacatcagaccccggcttatcaaactccaccatgatataaaatagaagcagctgtctcatatatgtagattat |
204 |
Q |
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| T |
41089090 |
ttaaaatgccatttcctgtcaagaaaccacatcagaccccggcttatcaaactccaccatgatataaaatagaagcagctgcctcatatatgtagattat |
41088991 |
T |
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| Q |
205 |
acaaaataaattacctagaatattaacagtagctgcctcaaaatatgcagattacacacatccgcacgcctaccccaaactagcataatactgcgaattg |
304 |
Q |
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| T |
41088990 |
acaaaataaattacctagaatattaacagtagctgcctcaaaatatgcagattacacacatccgcacgcctaccccaaactagcataatactgcgaattg |
41088891 |
T |
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| Q |
305 |
gcacaagaaagagaccccataaatctccttaccaccatgatatcctctgaataacacttcattggaaccatctacc |
380 |
Q |
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| T |
41088890 |
gcacaagaaagagaccccataaatctccttaccaccatgatatcctctgaataacacttcattggaaccatctacc |
41088815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 41081174 - 41080921
Alignment:
| Q |
8 |
caccacagataacgaaagaccaat---aaggtagttttaacattatgcatgagcatgactagaaccataatggtaagggataagctatgatttagattcg |
104 |
Q |
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| T |
41081174 |
caccatagataatgaaagaccaatctaaagttagttttaacattaggcatgag------tagaaccatattggtaagggatatgctatgattttgattgg |
41081081 |
T |
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| Q |
105 |
ttaaaatgccatttcctgtcaagaaaccacatcagaccccggcttatcaaactccaccatgatataaaatagaagcagctgtctcatatatgtagattat |
204 |
Q |
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| T |
41081080 |
ttaaaatgccatttcctgtcaagaaacgacataacccccctacttatcatactccaccataatataaaatagaagcagctgtcttatatatgcagattat |
41080981 |
T |
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| Q |
205 |
acaaaataaattacctagaatattaacagtagctgcctcaaaatatgcagattacacaca |
264 |
Q |
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| T |
41080980 |
acaaaataaattacctaaaatattaaccgcagatgcctcaaaatatgcagattacacaca |
41080921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 41103559 - 41103396
Alignment:
| Q |
8 |
caccacagataacgaaagaccaat---aaggtagttttaacattatgcatgagcatgactagaaccataatggtaagggataagctatgatttagattcg |
104 |
Q |
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| T |
41103559 |
caccatagataacgaaaggccaatttaaaggtagtttcaacattatgcatgag------tagaatcatattggtaacggataagctatgattttaattgg |
41103466 |
T |
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| Q |
105 |
ttaaaatgccatttcctgtcaagaaaccacatcagaccccggcttatcaaactccaccatgatataaaata |
175 |
Q |
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| T |
41103465 |
ttaaaatggcatttc-tgtcaagaaaccacatcagaccctggcttatcaaactccaccatgatataaaata |
41103396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 228 - 377
Target Start/End: Complemental strand, 41103397 - 41103246
Alignment:
| Q |
228 |
taacagtagctgcctcaaaatatgcagattaca--cacatccgcacgcctaccccaaactagcataatactgcgaattggcacaagaaagagaccccata |
325 |
Q |
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|||||| || ||||||||||||| |||||||| || ||| |||||||||| ||||||||||||| ||||| |||||||||| |||||||||| ||| | |
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| T |
41103397 |
taacagcagatgcctcaaaatatctagattacatccatatctgcacgcctacgccaaactagcatattactgtgaattggcacgagaaagagactccaca |
41103298 |
T |
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| Q |
326 |
aatctccttaccaccatgatatcctctgaataacacttcattggaaccatct |
377 |
Q |
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| T |
41103297 |
aatctacttgtcaccatgatatccactgaataacccttcattggaaccatct |
41103246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 367
Target Start/End: Complemental strand, 1216709 - 1216623
Alignment:
| Q |
281 |
aaactagcataatactgcgaattggcacaagaaagagaccccataaatctccttaccaccatgatatcctctgaataacacttcatt |
367 |
Q |
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| T |
1216709 |
aaactagcttaataccgagaattggcacaagaaagagactccacaaatctccttgccaccattatatccgttgaataacccttcatt |
1216623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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