View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20525_low_1 (Length: 375)
Name: NF20525_low_1
Description: NF20525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20525_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 40669087 - 40669443
Alignment:
| Q |
1 |
tagtccaaattcaaccattccatggttgcgacggctcagatcaattttctccgccatgtaggagcccacgtacgtgtcaacgttcaatttaatctggacc |
100 |
Q |
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| T |
40669087 |
tagtccaaattcaaccattccatggttgcgacggctcaaatcaattttctccgccatgtaggagcccacgtacgtgtcaacgttcaatttaatctggacc |
40669186 |
T |
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| Q |
101 |
atgttgttgccattgaaaaatgattgcaaagttgaggtttcaagaataatatcgttgtcgggacgtccttgctgattcctgtaaaatatcttgccatgaa |
200 |
Q |
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| T |
40669187 |
atgttgttgccattgaaaaatgattgcaaagttgaggtttcaagaataatatcgttgtcgggacgtccttgctgattcctgtaaaatatcttgccatgaa |
40669286 |
T |
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| Q |
201 |
atgcatcgtggtggtaggaaattcgaagatggccgttagggtttgaaagcaagagttttatgttccattcggctgtgagttttgtggtgttgcttacttt |
300 |
Q |
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| T |
40669287 |
atgcatcgtggtggtaggaaattcgaagatggccgttagggtttgaaagcaagagttttatgttccattcggctgagagttttgtggtgttgcttacttt |
40669386 |
T |
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| Q |
301 |
aaatgagctgagtgaggcatagtccactcggacacttgggtagtctgcttcgatggc |
357 |
Q |
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| T |
40669387 |
aaatgagctgagtgaggcatagtccactcggacacttgggtagtctgcttcgatggc |
40669443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 40662932 - 40663038
Alignment:
| Q |
180 |
tgtaaaatatcttgccatgaaatgcatcgtggtggtaggaaattcgaagatggccgttagggtttgaaagcaagagttttatgttccattcggctgtgag |
279 |
Q |
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| T |
40662932 |
tgtaaaatatcttgggatcaaatgaatcgtggtggtatgagattcgcaaatggtagttagggtttgatagggagagtgtaattttccattcagctgtgag |
40663031 |
T |
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| Q |
280 |
ttttgtg |
286 |
Q |
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| T |
40663032 |
ttttgtg |
40663038 |
T |
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