View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20525_low_2 (Length: 366)
Name: NF20525_low_2
Description: NF20525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20525_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 2786501 - 2786164
Alignment:
| Q |
19 |
attcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaaccagttttatg |
118 |
Q |
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| T |
2786501 |
attcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaaccagttttatg |
2786402 |
T |
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| Q |
119 |
atgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgctgg |
218 |
Q |
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| T |
2786401 |
atgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgctgg |
2786302 |
T |
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| Q |
219 |
agctgtcaatccacctgttgatgcgaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacaacaaac |
318 |
Q |
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| T |
2786301 |
agctgtcaatccaccggttgatgctaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacaacaaac |
2786202 |
T |
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| Q |
319 |
ttgccttcaaatcaaattcatgttaaagttgatgatgt |
356 |
Q |
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| T |
2786201 |
ttgccttcaaatcaaattcatgttaaagttgacgatgt |
2786164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 22517462 - 22517521
Alignment:
| Q |
156 |
tatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgc |
215 |
Q |
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| T |
22517462 |
tatttctctatcggtcgtctgcccaaaacaacttcccaaaattaaagccatctacaatgc |
22517521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 22517280 - 22517356
Alignment:
| Q |
74 |
agaagaatgaatccattgactcggaatcaggt-aaccagttttatgatgctgaagatgttgctaaagcatttccgcag |
150 |
Q |
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| T |
22517280 |
agaagactgaatccattgactca-aaccaagtgaaccagttatatgatgctgaagctgttgctaaagcgtttccgcag |
22517356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 22518232 - 22518281
Alignment:
| Q |
252 |
tcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtc |
301 |
Q |
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| T |
22518232 |
tcttattttaatatcagaaggttttagggaagcccgcagtgccttgagtc |
22518281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 22517213 - 22517262
Alignment:
| Q |
22 |
cttgtggcagccagtaatccttatccattgaagagaccaatatatgttcc |
71 |
Q |
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| T |
22517213 |
cttgtggcagccagtaatccttacccattgcagacaccggtatatgttcc |
22517262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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