View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20525_low_3 (Length: 283)
Name: NF20525_low_3
Description: NF20525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20525_low_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 34582275 - 34582012
Alignment:
| Q |
20 |
ggaatatgagatgggtggaaaatacacatttggcatgagccaataaaagagttcccttcaagtgtaaaaacacaattacaaaaattattttgatagccac |
119 |
Q |
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| T |
34582275 |
ggaatatgagatgggaggaaaataaacatttggcatgagccaataaaagagttcccttcaagtgtaaaaacacaattacaaaaaatattttgatagccac |
34582176 |
T |
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| Q |
120 |
tagatttgaagcataattccatcaacattcagcaaagtttgttcttccatcagacttgttgtaaactatggattgcacttattaaaagtgagttgctcct |
219 |
Q |
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| T |
34582175 |
tagatttgaagcataattccatcaacattcagcaaagtttgttcttccatcagacttgttgtaaactatggattgcacttactaaaagtgagttgctcct |
34582076 |
T |
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| Q |
220 |
gtgattgaacttgatgtcattgtgattcaacctggctgttgatactatgtgttgaacttgagct |
283 |
Q |
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| T |
34582075 |
gtgattgaacttgatgtcattgtgattcaacctggctgttgatactatgtgttgaacttgagct |
34582012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 34585774 - 34585708
Alignment:
| Q |
208 |
tgagttgctcctgtgattgaacttgatgtcattgtgattcaacctggctgttgatactatgtgttga |
274 |
Q |
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| T |
34585774 |
tgagttgctcctgtggttgaagttgatgtcatcttgattcaagctggctcttgatactatgtgttga |
34585708 |
T |
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