View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20526_low_2 (Length: 392)
Name: NF20526_low_2
Description: NF20526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20526_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 386491 - 386119
Alignment:
| Q |
1 |
caaccttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386491 |
caaccttccaaacacatcgagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattc |
386392 |
T |
|
| Q |
101 |
ataatcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtgggcctta |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
386391 |
ataatcaatacttcgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggcctgtgaaaagtccacacataaacgagtgggcctta |
386292 |
T |
|
| Q |
201 |
tgctttgttgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatcaaatcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
386291 |
tgctttgttgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatgaaatcaa |
386192 |
T |
|
| Q |
301 |
cttttgcagcggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattcttcatgcatga |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386191 |
cttttgcagcggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattcttcatgcatga |
386119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 38729051 - 38729420
Alignment:
| Q |
1 |
caaccttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattc |
100 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38729051 |
caaccttccaaacacaccgagctcgatttatctgtcccataagaactagataattgagaagaacattgacaaagtactttgcagcaccttcctccaattc |
38729150 |
T |
|
| Q |
101 |
ataatcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtgggcctta |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38729151 |
ataatcaatactttgaaagaattctcttacaaatgtcaacaccggctgtcccctctgttcggggcctgtgaatagtccacacataaacgagtgcgcctta |
38729250 |
T |
|
| Q |
201 |
tgctttgttgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatcaaatcaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38729251 |
tgctttgttgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagtatcaaatcaa |
38729350 |
T |
|
| Q |
301 |
cttttgcagcggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattcttcatgca |
370 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
38729351 |
cttttgcagcggagttcacatatgtttcaagaagaggcttggctgattcgtatatcccatttttcatgca |
38729420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University