View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20526_low_3 (Length: 384)
Name: NF20526_low_3
Description: NF20526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20526_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 18648777 - 18649011
Alignment:
| Q |
18 |
gttactccagtactttccggctccaattatcatacatgggtctgctctcaattgatgcatatacctttgctgcaaatagtaccaagttaactgcatttga |
117 |
Q |
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| T |
18648777 |
gttactccagtactttccggctccaattatcatacatgggtctgctctcaattgatgcatatacctttgctgcaaatagtaccaagttaactgcatttga |
18648876 |
T |
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| Q |
118 |
cacattaactgctagcctctcactttttgctagttgcttcaattcatcctgagaatcatagtgctcacatattagtgattctagtcatcataaaatcgac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18648877 |
cacattaactgctagcctctcactttttgctagttgcttcaattcatcctgagaatcatagtgctcacatgttagtgattctagtcatcataaaatcgac |
18648976 |
T |
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| Q |
218 |
aatttttcaatactagcatacgaaaatcttgacaa |
252 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
18648977 |
aatttttcaatactagcatacgaaaatcttgacaa |
18649011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 58 - 373
Target Start/End: Original strand, 18645018 - 18645347
Alignment:
| Q |
58 |
tctgctctcaattgatgcatatacctttgctgcaaatagtaccaagttaactgcatttgacacattaactgctagcctctcactttttgctagttgcttc |
157 |
Q |
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| T |
18645018 |
tctgctctcaattgatgcatataccttcgctgcaaatagcaccaagttgactgcatttgacacattaactgctagcctctcacgttttgctagttgcttc |
18645117 |
T |
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| Q |
158 |
aattcatcctgagaatcatagtgctcacatattagtgattctagtcatcataaaatcgacaatttttcaatactagcatacgaaaatcttgacaaattat |
257 |
Q |
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| T |
18645118 |
aattcatcctgagaatcatagtgctcacatattagtgattctagtcatcataaaatcgacaatttttcaatactagcatacgaaaatcttgacaaattat |
18645217 |
T |
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| Q |
258 |
tcatcaacatgtgtccgtggttatcaagttcagatgca-----------------tttaaaacttagccagttacatttataaactatggtacaaaactg |
340 |
Q |
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| T |
18645218 |
---tcaacatgtgtttgtgattatcaagttcagatgcatgctattttatgaggttttttaaacttagtcagttacatttagaaactatgctacaaaactg |
18645314 |
T |
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| Q |
341 |
cgaccatattgtaaatgttttagaggtctctgt |
373 |
Q |
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| T |
18645315 |
caaccatattgtaaatgttttagaggtctctgt |
18645347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 15535322 - 15535361
Alignment:
| Q |
18 |
gttactccagtactttccggctccaattatcatacatggg |
57 |
Q |
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| T |
15535322 |
gttactccagtactttccggctccaattatcatacatggg |
15535361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 17384951 - 17384990
Alignment:
| Q |
18 |
gttactccagtactttccggctccaattatcatacatggg |
57 |
Q |
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| T |
17384951 |
gttactccggtactttccggctccaattatcatacatggg |
17384990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 27309363 - 27309451
Alignment:
| Q |
80 |
acctttgctgcaaatagtaccaagttaactgcatttgacacattaactgctagcctctcactttttgctagttgcttcaattcatcctg |
168 |
Q |
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|||||||||||||| || |||||||| ||||||||||||| ||||| |||||| || ||||| |||||||||| ||||||||| |
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| T |
27309363 |
acctttgctgcaaacagcaccaagttgcatgcatttgacacaagtactgccgtcctctcgctctttgcaagttgcttcatttcatcctg |
27309451 |
T |
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