View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20527_high_2 (Length: 470)
Name: NF20527_high_2
Description: NF20527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20527_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 59 - 452
Target Start/End: Original strand, 4195125 - 4195518
Alignment:
| Q |
59 |
tacacaatggtaacacaaactgaaccgttgctaaaaccaacctacatttcattgcaagaacttcaaaaacacaacactcgcggcgatgcatggatctcca |
158 |
Q |
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| T |
4195125 |
tacacaatggtaacacaaactgaaccgttgctaaaaccaacctacatttcattgcaagaacttcaaaaacacaacactcgcggcgatgcatggatctcca |
4195224 |
T |
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| Q |
159 |
ttgacggcaagatctacgacgtttcaaaatgggccaaccaccatcccggcggcgagcttcctctcctcaacctcgccggccaagatgtcaccgatgcatt |
258 |
Q |
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| T |
4195225 |
ttgacggcaagatctacgacgtttcaaaatgggccaaccaccatcccggcggcgagcttcctctcctcaacctcgccggccaagatgtcaccgatgcatt |
4195324 |
T |
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| Q |
259 |
cctcgctttccaccctccatccgcttacaaacacctccaaaactttgccactggcagttacctacgtgactacgtcgtctctgacgtctcacgtgactat |
358 |
Q |
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| T |
4195325 |
cctcgctttccaccctccatccgcttacaaacacctccaaaactttgccactggcagttacctacgtgactacgtcgtctctgacgtctcacgtgactat |
4195424 |
T |
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| Q |
359 |
cgtgcccttttctccgaactaaccaaactgggtttgttcgaagagaaaggacacggtgttttagttttactgtccattatttctgttatgttct |
452 |
Q |
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| T |
4195425 |
cgtgcccttttctccgaactaaccaaactgggtttgttcgaagagaaaggacacggtgttttacttttactgtccattatttctgttatgttct |
4195518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 4186190 - 4186310
Alignment:
| Q |
156 |
ccattgacggcaagatctacgacgtttcaaaatgggccaaccaccatcccggcggcgagcttcctctcctcaacctcgccggccaagatgtcaccgatgc |
255 |
Q |
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| T |
4186190 |
ccattgacggcaagatatacgacgtctctaaatgggccaaccaccatcccggtggcgaattccctctaatcagccttgccggccaagaggttactgaagc |
4186289 |
T |
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| Q |
256 |
attcctcgctttccaccctcc |
276 |
Q |
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| T |
4186290 |
attccttgctttccaccctcc |
4186310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 4186137 - 4186180
Alignment:
| Q |
91 |
aaaaccaacctacatttcattgcaagaacttcaaaaacacaaca |
134 |
Q |
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| T |
4186137 |
aaaaccaacctacatttcactgcaagaactccaaaaacacaaca |
4186180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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