View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20527_high_3 (Length: 288)
Name: NF20527_high_3
Description: NF20527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20527_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 9161623 - 9161881
Alignment:
| Q |
12 |
atgaacacacatagaattagttgcattatcatacttcattttccatcacaatagttgcatgcagatttcttttctatgtctattgtgaaatgattccatg |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9161623 |
atgaacacacatagaactagttgcattatcatacttcattttccatcacaatagttgcatgcagatttcttttctatgtctattgtgaaatgattccatg |
9161722 |
T |
|
| Q |
112 |
actctgagcagttcttatgcttcttaaagcgaggaggtttgcactattagagactgtgggtataggggtagaaactgcatgcnnnnnnncaagaaattaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9161723 |
actctgagcagttcttatgcttcttaaagcgaggaggtttgcactattagagactgtgggtataggggtagaaactgcatgctttttttcaagaaattaa |
9161822 |
T |
|
| Q |
212 |
ctggtttaagctgtttatgcaaatgcattagtgtaacaccatctccatctccaataaaa |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9161823 |
ctggtttaagctgtttatgcaaatgcattagtgtaacaccatctccatctccaataaaa |
9161881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 9149001 - 9149056
Alignment:
| Q |
201 |
caagaaattaactggtttaagctgtttatgcaaatgcattagtgtaacaccatctcc |
257 |
Q |
| |
|
|||| ||||||||||| |||| ||| ||||||| || |||||||||||||||||||| |
|
|
| T |
9149001 |
caaggaattaactggtataagttgtctatgcaa-tggattagtgtaacaccatctcc |
9149056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University