View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20527_low_1 (Length: 665)
Name: NF20527_low_1
Description: NF20527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20527_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 16 - 660
Target Start/End: Complemental strand, 16733759 - 16733115
Alignment:
| Q |
16 |
aagaacttccaatttaggaagctcggaaatgaaatcaggaatttcgctgtgaaatttattgataaacaagttcaaaagagaaagttctcgaagattcgag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16733759 |
aagaacttccaatttaggaagctcggaaatgaaatcaggaatttcgctgtgaaatttattgataaacaagttcaaaagagaaagttctcgaagattcgag |
16733660 |
T |
|
| Q |
116 |
aattcgttcggaattcctcctgttaggttattgagtgataaatcaagagcattcaatctactcaaattacctaattcaggtggaataaaaccagtgagtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16733659 |
aattcgttcggaattcctcctgttaggttattgagtgataaatcaagagcattcaatctactcaaattacctaattcaggtggaataaaaccagtgagtt |
16733560 |
T |
|
| Q |
216 |
gannnnnnngcaagaaaagtgtatctagcttgttaagttgacctaactcaagtggaattgaacctttcaagaaacaacttgctaggtctaaatgaaccaa |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16733559 |
gatttttttgcaagaaaagtgtatctagcttgttaagttgacctaactcaagtggaattgaacctttcaagaaacaacttgctaggtctaaatgaaccaa |
16733460 |
T |
|
| Q |
316 |
attaatcaacttaccaaactcttttggaactccaccatcaaattgattgaaataacctaaataaagattttccaaactagtcaaatttccaagctcacta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16733459 |
attaatcaacttaccaaactcttttggaactccaccatcaaattgattgaaataacctaaataaagattttccaaactagtcaaatttccaagctcacta |
16733360 |
T |
|
| Q |
416 |
ggtaaaaaaccactcaaatcatttccagcaagagacaaaaaattaagctgtttcatttctccataacttgtaggaatttttccagaaaagtaattccctc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16733359 |
ggtaaaaaaccactcaaatcatttccagcaagagacaaaaaattaagctgtttcatttctccataacttgtaggaatttttccagaaaagtaattccctc |
16733260 |
T |
|
| Q |
516 |
caaaattcagatgcttgagacttgaaacttgagtaacaccacgaggaagcgaaccgttaaaaccattgttgtaaatatccaacacttcaagctctttcaa |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16733259 |
caaaattcagatgcttgagacttgaaacttgagtaacaccacgaggaagcgaaccgttaaaaccgttgttgtaaatatccaacacttcaagctctttcaa |
16733160 |
T |
|
| Q |
616 |
tttgttgaattcccaactcaagtttccactaaacatattcttcga |
660 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16733159 |
tttgttgaattcccaactcaagtttccactaaacatattgttcga |
16733115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 465
Target Start/End: Original strand, 39227592 - 39227900
Alignment:
| Q |
157 |
atcaagagcattcaatctactcaaattacctaattcaggtggaataaaaccagtgagttgannnnnnngcaagaaaagtgtatctagcttgttaagttga |
256 |
Q |
| |
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|||||||| ||||| ||||| | ||| ||||||| ||||||||| ||||| | |||||| ||||||||||||| ||||| |||| ||||| |
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| T |
39227592 |
atcaagagatttcaaactactaagattccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagtttt |
39227691 |
T |
|
| Q |
257 |
cctaactcaagtggaattgaacctttcaagaaacaacttgctaggtctaaatgaaccaaattaatcaacttaccaaactcttttggaactccaccatcaa |
356 |
Q |
| |
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|||| |||| ||||||||||||||||||| ||| |||| || || | |||||| ||||||| | |||||||| | ||||| | ||||||||| |
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| T |
39227692 |
cctagctcatgtggaattgaacctttcaaaccacagtttgcaagatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaa |
39227791 |
T |
|
| Q |
357 |
attgattgaaataacctaaataaagattttccaaactagtcaaatttccaagctcactaggtaaaaaaccactcaaatcatttccagcaagagacaaaaa |
456 |
Q |
| |
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| | |||| |||||||||| |||| | | | | |||| | ||||||||||||| ||||| ||||| ||||||||||| || |||||||||||| | |
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| T |
39227792 |
actcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagagacaaata |
39227891 |
T |
|
| Q |
457 |
attaagctg |
465 |
Q |
| |
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|||||||| |
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| T |
39227892 |
gttaagctg |
39227900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 465
Target Start/End: Original strand, 25546791 - 25547099
Alignment:
| Q |
157 |
atcaagagcattcaatctactcaaattacctaattcaggtggaataaaaccagtgagttgannnnnnngcaagaaaagtgtatctagcttgttaagttga |
256 |
Q |
| |
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|||||||| ||||| ||||| | ||| ||||||| ||||||||| ||||| | |||||| ||||||||||||| ||||| |||| ||||| |
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| T |
25546791 |
atcaagagatttcaaactactaagattccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagtttt |
25546890 |
T |
|
| Q |
257 |
cctaactcaagtggaattgaacctttcaagaaacaacttgctaggtctaaatgaaccaaattaatcaacttaccaaactcttttggaactccaccatcaa |
356 |
Q |
| |
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| || |||| ||||||||||||||||||| ||| |||| || || | ||||| ||||||| | |||||||| | ||||| | ||||||||| |
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| T |
25546891 |
cgtagctcatgtggaattgaacctttcaaaccacagtttgcaagatcaagatgaagtaaattaacaaggttaccaaaatgaggtggaatttcaccatcaa |
25546990 |
T |
|
| Q |
357 |
attgattgaaataacctaaataaagattttccaaactagtcaaatttccaagctcactaggtaaaaaaccactcaaatcatttccagcaagagacaaaaa |
456 |
Q |
| |
|
| | |||| |||||||||| |||| | | | | |||| | ||||||||||||| ||||| ||||| ||||||||||| || |||||||||||| | |
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| T |
25546991 |
actcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagagacaaata |
25547090 |
T |
|
| Q |
457 |
attaagctg |
465 |
Q |
| |
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|||||||| |
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|
| T |
25547091 |
gttaagctg |
25547099 |
T |
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Back To:
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