View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20527_low_8 (Length: 210)
Name: NF20527_low_8
Description: NF20527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20527_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 10069010 - 10069202
Alignment:
| Q |
1 |
cacttgatgctgccatcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttc |
100 |
Q |
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| T |
10069010 |
cacttgatgctgccatcatcatggccactaccagcatagcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttc |
10069109 |
T |
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| Q |
101 |
ttttcttgcgaggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttat |
193 |
Q |
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| T |
10069110 |
ttttcttgcaaggaaagaaatcgagagaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgcgactttat |
10069202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 10106768 - 10106963
Alignment:
| Q |
1 |
cacttgatgctgccatcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttccatttctg---aaaattttcttggaaattttgt |
97 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||| ||||||||| |||| |||||||||||| | |
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| T |
10106768 |
cacttgatgctgccatcatcatgaccactaccaccatagcaaaaatttgattcatcttcaatgcctccatttctataaaaaaaaaacttggaaattttct |
10106867 |
T |
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| Q |
98 |
ttcttttcttgcgaggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttat |
193 |
Q |
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| T |
10106868 |
ttcttttcttttgaggaaagaaagtgagaggaatgggtaggcaaatacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttat |
10106963 |
T |
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