View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20528_high_12 (Length: 207)
Name: NF20528_high_12
Description: NF20528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20528_high_12 |
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| [»] scaffold0081 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 40542614 - 40542743
Alignment:
| Q |
19 |
caataaatcaaatccatcatcttcaaccacaaactcaattcaaaactaacaccctttt-ttcaccttcaatggcgtcaattcttttatgaacaaagaaaa |
117 |
Q |
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| T |
40542614 |
caataaatcaaatccatcatcttcaaccacaaactcaattcaaaactaacaccctttttttcaccttcaatggcgtcaattcttttatgaacaaagaaaa |
40542713 |
T |
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| Q |
118 |
caaataacagatagatcacagtcgcacaaa |
147 |
Q |
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| T |
40542714 |
caaacaacaaatagatcacagtcgcacaaa |
40542743 |
T |
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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 40722747 - 40722625
Alignment:
| Q |
25 |
atcaaatccatcatcttcaaccacaaactcaattcaaaactaacaccctttttt--caccttcaatggcgtcaattcttttatgaacaaagaaaacaaat |
122 |
Q |
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| T |
40722747 |
atcaaatccatcatcttcaaccagaaactcaattcaaaactaacacccttttttttcaccttcaatggcgtcaattcttttatcaacaaagaaaacaaat |
40722648 |
T |
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| Q |
123 |
aacagatagatcacagtcgcaca |
145 |
Q |
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| T |
40722647 |
aacaaatagatcacagtcgcaca |
40722625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 51694192 - 51694142
Alignment:
| Q |
35 |
tcatcttcaaccacaaactcaattcaaaactaacaccc-ttttttcacctt |
84 |
Q |
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| T |
51694192 |
tcatcttcatccacaaactcaattcaaaattaatacccattttttcacctt |
51694142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 20066961 - 20066828
Alignment:
| Q |
25 |
atcaaatccatcatcttcaaccacaaactcaattcaaaactaacacccttttttc------------accttcaatggcgtcaattcttttatgaacaaa |
112 |
Q |
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| T |
20066961 |
atcaaatccatcatcttcaaccacaaactcaattcaaaactaacaccttttttttttttttttttttaccttcaatggcgtcaattcttttatgaacaaa |
20066862 |
T |
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| Q |
113 |
gaaaacaaataacagatagatcacagtcgcacaa |
146 |
Q |
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| T |
20066861 |
gaaaacaaataacaaatagatcacagtcgcacaa |
20066828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 20066508 - 20066561
Alignment:
| Q |
37 |
atcttcaaccacaaactcaattcaaaactaacaccc---ttttttcaccttcaa |
87 |
Q |
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| T |
20066508 |
atcttcaaccataaactcaattcaaaactaacacccaatttttttcaccttcaa |
20066561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 25421018 - 25421061
Alignment:
| Q |
35 |
tcatcttcaaccacaaactcaattcaaaactaacaccctttttt |
78 |
Q |
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| T |
25421018 |
tcatcttcaaccacaaactcaattcaaaactaacaccctttttt |
25421061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 17522274 - 17522230
Alignment:
| Q |
35 |
tcatcttcaaccacaaactcaattcaaaactaacacccttttttc |
79 |
Q |
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| T |
17522274 |
tcatcttcaaccacaaactcaattcaaaactaacacccatttttc |
17522230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0081 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0081
Description:
Target: scaffold0081; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 42789 - 42737
Alignment:
| Q |
35 |
tcatcttcaaccacaaactcaattcaaaactaacaccc-ttttttcaccttca |
86 |
Q |
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| T |
42789 |
tcatcttcaaccacaaactcaattcaaaagtaacacccattttttcaccttca |
42737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 19218672 - 19218622
Alignment:
| Q |
35 |
tcatcttcaaccacaaactcaattcaaaactaacaccc-ttttttcacctt |
84 |
Q |
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| T |
19218672 |
tcatcttcatccacaaactcaattcaaaactaacacccattttttcacctt |
19218622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 25002230 - 25002282
Alignment:
| Q |
35 |
tcatcttcaaccacaaactcaattcaaaactaacacc-cttttttcaccttca |
86 |
Q |
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| T |
25002230 |
tcatcttcaaccacaaactcaatgcaaaactaacaccatttttttcaccttca |
25002282 |
T |
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