View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20528_high_3 (Length: 510)

Name: NF20528_high_3
Description: NF20528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20528_high_3
NF20528_high_3
[»] chr4 (10 HSPs)
chr4 (197-492)||(25112349-25112644)
chr4 (5-162)||(25112158-25112315)
chr4 (301-492)||(25062927-25063118)
chr4 (301-491)||(25240765-25240955)
chr4 (59-139)||(25241203-25241283)
chr4 (60-137)||(25062655-25062732)
chr4 (197-304)||(25241011-25241127)
chr4 (310-481)||(28717619-28717788)
chr4 (314-410)||(28705721-28705817)
chr4 (92-139)||(28706977-28707024)
[»] scaffold0011 (4 HSPs)
scaffold0011 (301-492)||(222859-223050)
scaffold0011 (301-492)||(184964-185155)
scaffold0011 (48-139)||(223379-223470)
scaffold0011 (77-139)||(185500-185562)
[»] chr6 (4 HSPs)
chr6 (301-484)||(17116164-17116346)
chr6 (301-484)||(17125603-17125786)
chr6 (48-139)||(17116603-17116694)
chr6 (48-139)||(17126041-17126132)
[»] scaffold0250 (2 HSPs)
scaffold0250 (301-492)||(16753-16944)
scaffold0250 (54-139)||(17370-17455)
[»] scaffold0246 (1 HSPs)
scaffold0246 (53-136)||(3554-3637)
[»] chr5 (2 HSPs)
chr5 (314-410)||(24333621-24333717)
chr5 (301-395)||(4893943-4894037)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 197 - 492
Target Start/End: Original strand, 25112349 - 25112644
Alignment:
Q  197 tatatcaagcaattattgtagaaaacaacttagaataaactacttattataagataataacaattaaaagttttttgtcaatataataacagtaatagtg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25112349 tatatcaagcaattattgtagaaaacaacttagaataaactacttattataagataataacaattaaaagttttttgtcaatataataacagtaatagtg 25112448  T
Q  297 atggtacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccat 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25112449 atggtacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccat 25112548  T
Q  397 aattttaaccagaagccccttatgctccttgcattggatccgaatcaacacttgttttcctaacacttttgcttccacttgaaatggtgaaccaac 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25112549 aattttaaccagaagccccttatgctccttgcattggatccgaatcagcacttgttttcctaacactcttgcttccacttgaaatggtgaaccaac 25112644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 25112158 - 25112315
Alignment:
Q  5 aatatttgtgacttttgttaaccgacagctccacaaaaacaccttataatgacgtaaacttcaataatgccatgcgtacgttcttcacaagttcctttat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25112158 aatatttgtgacttttgttaaccgacagctccacaaaaacaccttatgatgacgtaaacttcaataatgccatgcgtacgttcttcacaagttcctttat 25112257  T
Q  105 gctcaagttgtacccttcacccaactataaaataacatcaatggtaaatttcatggag 162  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25112258 gctcaagttgtacccttcacccaactataaaataatatcaatggtaaatttcatggag 25112315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 301 - 492
Target Start/End: Original strand, 25062927 - 25063118
Alignment:
Q  301 tacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccataatt 400  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||||| || |||||||||| |||||||||    
T  25062927 tacctgagcgatgatggtaatgtcgagtgtagactctccaaagggtaagacactactattgacaacaaatagttgatatctttgaatttcaaccataatt 25063026  T
Q  401 ttaaccagaagccccttatgctccttgcattggatccgaatcaacacttgttttcctaacacttttgcttccacttgaaatggtgaaccaac 492  Q
    ||||| ||||||||||| |||||||  |||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  25063027 ttaactagaagccccttgtgctcctgacattggatccgaattaacatttgttttcctaacactcttgcttccacttgaaatggtgaaccaac 25063118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 301 - 491
Target Start/End: Complemental strand, 25240955 - 25240765
Alignment:
Q  301 tacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccataatt 400  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||    
T  25240955 tacctgagcaatgatggtaatgtcgagtatagaatctccaaagggtatgacactgctattgacaacaaatagttgatatttttgaatttcaaccataatt 25240856  T
Q  401 ttaaccagaagccccttatgctccttgcattggatccgaatcaacacttgttttcctaacacttttgcttccacttgaaatggtgaaccaa 491  Q
    ||||| ||||||||| | |||||||  ||||| || |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  25240855 ttaacgagaagccccctgtgctcctgacattgaattcgaatcaacatttgttttcctaacactcttgcttccacttgaaatgttgaaccaa 25240765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 25241283 - 25241203
Alignment:
Q  59 taaacttcaataatgccatgcgtacgttcttcacaagttcctttatgctcaagttgtacccttcacccaactataaaataa 139  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25241283 taaacttcaatagtgccatgcgtacgttcttcacaagttcctttatgctcaggttgtacccttcacccaactataaaataa 25241203  T

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Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 25062655 - 25062732
Alignment:
Q  60 aaacttcaataatgccatgcgtacgttcttcacaagttcctttatgctcaagttgtacccttcacccaactataaaat 137  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25062655 aaacttcaatacagccatgcgtacgttcttcacaagttcctttgtgctcaagttgtacccttcacccaactataaaat 25062732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 197 - 304
Target Start/End: Complemental strand, 25241127 - 25241011
Alignment:
Q  197 tatatcaagcaattattgtagaaaacaacttagaataaactacttattataagataataa---------caattaaaagttttttgtcaatataataaca 287  Q
    |||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||         |||||||||  | ||||||||||||||||||    
T  25241127 tatatcaatcaattcttgtagaaaacaacttacaacaaactacttattataagataataacaataataacaattaaaaaatatttgtcaatataataaca 25241028  T
Q  288 gtaatagtgatggtacc 304  Q
    || ||||||||||||||    
T  25241027 gttatagtgatggtacc 25241011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 310 - 481
Target Start/End: Complemental strand, 28717788 - 28717619
Alignment:
Q  310 aatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccataattttaaccaga 409  Q
    ||||||||||||||||||  |  |||||||||| | ||||||| |||| |||| || |||||||| |||||||||||| | ||||||||||||||| |||    
T  28717788 aatgatggtaatgtcgaggattcaatctccaaaagataagacattgtttttgaaaataaatagtttaaatttttgaatcttgaccataattttaactaga 28717689  T
Q  410 agccccttatgctccttgcattggatccgaatcaacacttgttttcctaacacttttgcttccacttgaaat 481  Q
    |  ||||| | ||  |  |||||||||| ||||||||    ||| ||||||||| |||||||||| ||||||    
T  28717688 a--cccttgtacttatgtcattggatccaaatcaacatagctttccctaacactcttgcttccacatgaaat 28717619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 410
Target Start/End: Complemental strand, 28705817 - 28705721
Alignment:
Q  314 atggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccataattttaaccagaa 410  Q
    ||||||||||| ||  ||||||||||||| | ||||||| || | |||||||||||||||| |||||||| ||||| | ||||||||||||| ||||    
T  28705817 atggtaatgtccaggatagaatctccaaaagataagacattgcttttgacaacaaatagtttaaattttttaattttggccataattttaactagaa 28705721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 28707024 - 28706977
Alignment:
Q  92 caagttcctttatgctcaagttgtacccttcacccaactataaaataa 139  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  28707024 caagttcctttatgctcaagttgttgccttcacccaactataaaataa 28706977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 301 - 492
Target Start/End: Complemental strand, 223050 - 222859
Alignment:
Q  301 tacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccataatt 400  Q
    ||||||||||||||| ||||| ||||   ||||||||||||||||||| |||||| | ||||||||| ||||||||||| |||| || ||||||||||||    
T  223050 tacctgagcaatgatagtaatatcgatgatagaatctccaaagggtaaaacactgctgttgacaacatatagttgaaatctttggatctcgaccataatt 222951  T
Q  401 ttaaccagaagccccttatgctccttgcattggatccgaatcaacacttgttttcctaacacttttgcttccacttgaaatggtgaaccaac 492  Q
    || || | ||||||||| |  || || |||||||||||||||||||  | ||| |||||||||||||||||||||||||||  |||||||||    
T  222950 ttcactaaaagccccttgtattctttacattggatccgaatcaacatatatttccctaacacttttgcttccacttgaaatattgaaccaac 222859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 301 - 492
Target Start/End: Complemental strand, 185155 - 184964
Alignment:
Q  301 tacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccataatt 400  Q
    ||||||||||||||| ||||| ||||   ||||||||||||||||||| |||||  | ||||||| | ||||||||||| |||| || ||||||||||||    
T  185155 tacctgagcaatgatagtaatatcgaagatagaatctccaaagggtaaaacactactgttgacaatacatagttgaaatctttggatctcgaccataatt 185056  T
Q  401 ttaaccagaagccccttatgctccttgcattggatccgaatcaacacttgttttcctaacacttttgcttccacttgaaatggtgaaccaac 492  Q
    || || | ||||||||| |  || || |||||||||||||||||||  | ||| |||||||||||||||||||||||||||  |||||||||    
T  185055 ttcactaaaagccccttgtattctttacattggatccgaatcaacatatatttccctaacacttttgcttccacttgaaatattgaaccaac 184964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 223470 - 223379
Alignment:
Q  48 ttataatgacgtaaacttcaataatgccatgcgtacgttcttcacaagttcctttatgctcaagttgtacccttcacccaactataaaataa 139  Q
    |||||||||| |||||||||||  | || |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  223470 ttataatgacataaacttcaatgcttccttgcgtatgttcttcacaagttgctttatgctcaagttgtagccttcacccaactataaaataa 223379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 185562 - 185500
Alignment:
Q  77 tgcgtacgttcttcacaagttcctttatgctcaagttgtacccttcacccaactataaaataa 139  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  185562 tgcgtatgttcttcacaagttcctttatgctcaagttgtagccttcacccaactataaaataa 185500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 301 - 484
Target Start/End: Complemental strand, 17116346 - 17116164
Alignment:
Q  301 tacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccataatt 400  Q
    |||||||||||| || ||||| || ||  ||||||||||||| ||||||||||| ||||| |||||||||||||||||  ||||||| || |||||||||    
T  17116346 tacctgagcaataatagtaatatcaaggatagaatctccaaaaggtaagacactattatttacaacaaatagttgaaacctttgaatctcaaccataatt 17116247  T
Q  401 ttaaccagaagccccttatgctccttgcattggatccgaatcaacacttgttttcctaacacttttgcttccacttgaaatggt 484  Q
    ||||| ||||||||||| ||||| | ||||||||||| ||||||||  | ||||||||| | | ||||||||||||||||||||    
T  17116246 ttaactagaagccccttgtgctcttggcattggatcc-aatcaacatatattttcctaagattcttgcttccacttgaaatggt 17116164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 301 - 484
Target Start/End: Complemental strand, 17125786 - 17125603
Alignment:
Q  301 tacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccataatt 400  Q
    |||||||||||| || |||||||||||  ||||||||||||| ||||||||||| ||||||||||| ||||||| |||  ||||||| || |||||||||    
T  17125786 tacctgagcaataatagtaatgtcgaggatagaatctccaaaaggtaagacactattattgacaacgaatagtttaaacctttgaatctcaaccataatt 17125687  T
Q  401 ttaaccagaagccccttatgctccttgcattggatccgaatcaacacttgttttcctaacacttttgcttccacttgaaatggt 484  Q
    ||||| ||||||||  | ||||| | ||||||||| ||||||||||  | ||||||||| | | ||||||||||||||||||||    
T  17125686 ttaactagaagccctatgtgctcttggcattggattcgaatcaacatatattttcctaagattcttgcttccacttgaaatggt 17125603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 17116694 - 17116603
Alignment:
Q  48 ttataatgacgtaaacttcaataatgccatgcgtacgttcttcacaagttcctttatgctcaagttgtacccttcacccaactataaaataa 139  Q
    |||| ||||| |||||||||||  ||||||||||| |||||||||||||||||||||||||| |||||| | |||| |||||||||||||||    
T  17116694 ttatgatgacataaacttcaatgctgccatgcgtaggttcttcacaagttcctttatgctcatgttgtagctttcatccaactataaaataa 17116603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 17126132 - 17126041
Alignment:
Q  48 ttataatgacgtaaacttcaataatgccatgcgtacgttcttcacaagttcctttatgctcaagttgtacccttcacccaactataaaataa 139  Q
    |||| ||||| |||||||||||  | ||||||||| ||||||||||||||||||||||| || |||||| |||||| |||||||||||||||    
T  17126132 ttatgatgacataaacttcaatgcttccatgcgtaggttcttcacaagttcctttatgcacatgttgtagccttcatccaactataaaataa 17126041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 301 - 492
Target Start/End: Complemental strand, 16944 - 16753
Alignment:
Q  301 tacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccataatt 400  Q
    |||||||||||||||||||| |||||    |||||||||||| ||||| |||||   ||| |||||||||||||||||  ||||||| ||||||||||||    
T  16944 tacctgagcaatgatggtaacgtcgatgagagaatctccaaaaggtaaaacactaccattaacaacaaatagttgaaacctttgaatctcgaccataatt 16845  T
Q  401 ttaaccagaagccccttatgctccttgcattggatccgaatcaacacttgttttcctaacacttttgcttccacttgaaatggtgaaccaac 492  Q
    ||||| | ||||||||| ||||| | |||||||||||||||||  |  | ||| ||||| ||| |||||||||||||||||||| |||||||    
T  16844 ttaactataagccccttgtgctcttggcattggatccgaatcagtatatatttccctaagactcttgcttccacttgaaatggtaaaccaac 16753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 17455 - 17370
Alignment:
Q  54 tgacgtaaacttcaataatgccatgcgtacgttcttcacaagttcctttatgctcaagttgtacccttcacccaactataaaataa 139  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||    
T  17455 tgacataaacttcaatactgccatgcgtaggttcttcacaagttcctttatgctcatgttgtagccttcatccatctataaaataa 17370  T

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Target: scaffold0246 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 3554 - 3637
Alignment:
Q  53 atgacgtaaacttcaataatgccatgcgtacgttcttcacaagttcctttatgctcaagttgtacccttcacccaactataaaa 136  Q
    ||||| |||||||||||  ||||||| ||| |||||| |||||||||||||||||||||||||||| |||||||| ||| ||||    
T  3554 atgacataaacttcaatgctgccatgtgtaggttcttgacaagttcctttatgctcaagttgtacctttcacccatctacaaaa 3637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 410
Target Start/End: Complemental strand, 24333717 - 24333621
Alignment:
Q  314 atggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgaccataattttaaccagaa 410  Q
    ||||||||||| ||  ||||||||||||| | ||||||| || | |||||||||||||||| |||||||| ||||| | ||||||||||||| ||||    
T  24333717 atggtaatgtccaggatagaatctccaaaagataagacattgcttttgacaacaaatagtttaaattttttaattttggccataattttaactagaa 24333621  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 4894037 - 4893943
Alignment:
Q  301 tacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgacca 395  Q
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T  4894037 tacctgagcaacgatggttatatcaaggatagaatctccaaaaggtaggacactgttattaacaacaaagagatgaagcttttgaatctcgacca 4893943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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