View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20528_high_4 (Length: 441)
Name: NF20528_high_4
Description: NF20528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20528_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 5422827 - 5423267
Alignment:
| Q |
1 |
aaagatgatgaaaagtgtacatgccacacaaataaatggtgaatgtagcaataaagaacaccatagtatcttgccatccaatagagtactgagactgtgt |
100 |
Q |
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| T |
5422827 |
aaagatgatgaaaagtgtacatgccacacaaataaatggtaaatgtagcaataaagaacgccatagtatcttgccatccaatagagtactgagactgtgt |
5422926 |
T |
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| Q |
101 |
ttgaattggaaccattgaggattggtatgttgaaggattaggaaatggtaaccatagtgatctttgcattgagatggaattttattatctttgttgtgaa |
200 |
Q |
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| T |
5422927 |
ttgaattggaaccattgaggattggtatgttgaaggattaggaaatggtaaccatagtgatctttgcattgagatggaattttattttctttgttgtcaa |
5423026 |
T |
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| Q |
201 |
ttttcttgcataacaatataaggcctagagtactatatgttggagggaagaaaataatagattgaagaagacttgtagttgagataagaattagaattgg |
300 |
Q |
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| T |
5423027 |
ttttcttgcataacaatataaggcctagagtactatatgttggagggaagaaaataatagattgaagaagacttgtagttgagataagaattagaattgg |
5423126 |
T |
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| Q |
301 |
aattagaattagaagtgttgttcggttgttagttactagctagctttctatacttaacaaacagccaactgttttaatgtgagaatattggtgggtattt |
400 |
Q |
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| T |
5423127 |
aattagaattagaagtgttgttcggttgttagttactagctagctttctatacttaacaaacagccaactgttttaatgtgagaatattggtgggtattt |
5423226 |
T |
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| Q |
401 |
gactgacaagtatactttcatgtgttaaaaagcatgaaatg |
441 |
Q |
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| T |
5423227 |
gactgacaagtatactttcatgtgttaaaaagcatgaaatg |
5423267 |
T |
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