View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20528_high_5 (Length: 435)
Name: NF20528_high_5
Description: NF20528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20528_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 241 - 418
Target Start/End: Original strand, 39300154 - 39300331
Alignment:
| Q |
241 |
tcctcttccaccaatatctccaatggcttttcctgcatgatctttgttcatttcaccaccttgtaatgcttcaatgctaccatgtggtggttccttgtct |
340 |
Q |
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| T |
39300154 |
tcctcttccaccaatatctccaatggcttttcctgcatgatctttgttcatttcaccaccttgtaatgcttcaatgctaccatgtggtggttccttgtct |
39300253 |
T |
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| Q |
341 |
accactgtaagttgttcaaaatgagttgtcatctttgggactctgtctttttcaacatgaatatctctctcgtctgtg |
418 |
Q |
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| T |
39300254 |
accactgtaagttgttcaaaatgggtagtcatctttgggactctgtctttttcaacatgaatatctctctcgtttgtg |
39300331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 39299713 - 39299905
Alignment:
| Q |
19 |
ggttcggctatcaagtttttctctatcatctgttaaaccttttgattccatttgaaactttcccacatcacgaaaaccaccaaaatcttcttttccacct |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39299713 |
ggttcggctatcaagtttttctctatcatcggttaaaccttttgattccatttgaaactttcccacatcacgaacaccaccaaaatcttcttttc----- |
39299807 |
T |
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| Q |
119 |
actctgtttcctgctacatttgcactatcacgaacatgtgcacgatcaaggtaactttgattctcgttacgatcaggaagagactgaaagtttgaaccaa |
218 |
Q |
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| T |
39299808 |
----------ctgctacatttgcactatcacgaacatgtgcacgatcaaggtaactttgattctcgttacgatcaggaagagactgaaagtttgaaccaa |
39299897 |
T |
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