View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20528_low_1 (Length: 712)

Name: NF20528_low_1
Description: NF20528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20528_low_1
NF20528_low_1
[»] chr2 (1 HSPs)
chr2 (11-712)||(39300304-39300997)


Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 11 - 712
Target Start/End: Complemental strand, 39300997 - 39300304
Alignment:
Q  11 caaaggcaaaacaaaattatgtatggattagtccacacaaaatnnnnnnnnntcattgacactctaaagattcaaacttgagatttgaatgaatgacagt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||  ||||||||||||||||||||||||||||||||||||| ||| |    
T  39300997 caaaggcaaaacaaaattatgtatggattagtccacacaaaataaaaaaaa-tcagggacactctaaagattcaaacttgagatttgaatgaatcacact 39300899  T
Q  111 ctaaatataattgttcaaaaataacccacaacaaaaggaagatcgaattgaatattcttgaatcaccaataaactgttaaatcatttattgagaccaggt 210  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300898 ctaaatataattgttcaaaaataagccacaacaaaacgaagatcgaattgaatattcttgaatcaccaataaactgttaaatcatttattgagaccaggt 39300799  T
Q  211 gtcttccattgatctgcagtgtacctctttctaccaagcacaaactcatacgaggcactccttcaatcttccacgtgtctttaaacacgaaaaaccagcc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39300798 gtcttccattgatctgcagtgtacctctttctaccaagcacaaactcatacgaggcaatccttcaatcttccacgtgtctttaaacacgaaaaaccagcc 39300699  T
Q  311 tcgtctcatccaatcatcctaatccatctatattttaattttcattattataagctgagtcacaatatccaatttcacaacattcacacgtgtcattaat 410  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  39300698 tcgtttcatccaatcatcctaatccatctatattttaattttcattattataagctgagtcacaatatccaatttcacaccattcacacgtgttattaat 39300599  T
Q  411 cactgtttcttattccacatgtcatactccatgcaaaacatatccaccacaaacctcttcaaaccgccaatacctttctccttttaaatcacacaacatt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300598 cactgtttcttattccacatgtcatactccatgcaaaacatatccaccacaaacctcttcaaaccgccaatacctttctccttttaaatcacacaacatt 39300499  T
Q  511 tccatgcacacatacaaaaaacatcacaagtacttcaacaaagttcaagcatcttaaactaccnnnnnnnnnnnnnncaatcaaaagcaaaaccgtacgt 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |              |||||||||||||||||||||||    
T  39300498 tccatgcacacatacaaaaaacatcacaagtacttcaacaaagttcaagcatcttaaacta-caaaaaaaaaaaaaacaatcaaaagcaaaaccgtacgt 39300400  T
Q  611 aacacccttttgttcttgttcnnnnnnnaaacacacaaaatggcatctgaacaattgtctcgcagagaaaacaccacaaacgagagagatattcatgttg 710  Q
    ||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300399 aacacccttttgttcttgtt------aaacacacacaaaatggcatctgaacaattgtctcgcagagaaaacaccacaaacgagagagatattcatgttg 39300306  T

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