View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20528_low_2 (Length: 709)

Name: NF20528_low_2
Description: NF20528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20528_low_2
NF20528_low_2
[»] chr6 (7 HSPs)
chr6 (351-702)||(11307962-11308328)
chr6 (18-277)||(11308445-11308704)
chr6 (354-409)||(11314008-11314063)
chr6 (322-352)||(11308370-11308400)
chr6 (360-406)||(11589355-11589401)
chr6 (364-409)||(607830-607875)
chr6 (485-525)||(16125023-16125063)
[»] chr3 (8 HSPs)
chr3 (74-192)||(43021304-43021423)
chr3 (360-419)||(43020020-43020079)
chr3 (360-404)||(43021651-43021695)
chr3 (360-419)||(37521841-37521900)
chr3 (360-415)||(8237726-8237781)
chr3 (354-409)||(8993660-8993715)
chr3 (360-419)||(24515987-24516046)
chr3 (360-407)||(36656897-36656944)
[»] chr1 (9 HSPs)
chr1 (99-250)||(35909110-35909256)
chr1 (360-419)||(10765748-10765807)
chr1 (354-419)||(5493263-5493328)
chr1 (360-420)||(3346028-3346088)
chr1 (360-419)||(5494131-5494191)
chr1 (345-404)||(12214989-12215049)
chr1 (360-404)||(38832845-38832889)
chr1 (361-404)||(14230477-14230520)
chr1 (354-419)||(5489564-5489629)
[»] chr5 (3 HSPs)
chr5 (360-416)||(19986878-19986934)
chr5 (360-403)||(2807991-2808034)
chr5 (362-406)||(3959690-3959734)
[»] chr4 (6 HSPs)
chr4 (360-409)||(2215691-2215740)
chr4 (360-404)||(30925380-30925424)
chr4 (360-419)||(35603202-35603262)
chr4 (354-404)||(30926008-30926058)
chr4 (482-523)||(39054014-39054055)
chr4 (360-419)||(24549965-24550025)
[»] chr2 (5 HSPs)
chr2 (475-530)||(744537-744592)
chr2 (360-416)||(38564615-38564671)
chr2 (368-419)||(27530233-27530284)
chr2 (359-414)||(44021780-44021835)
chr2 (368-404)||(34061324-34061360)
[»] chr7 (2 HSPs)
chr7 (360-404)||(43071726-43071770)
chr7 (463-520)||(44406858-44406917)
[»] chr8 (4 HSPs)
chr8 (360-419)||(4047529-4047588)
chr8 (354-419)||(41829481-41829547)
chr8 (187-220)||(32482394-32482427)
chr8 (360-404)||(24409222-24409266)
[»] scaffold0443 (1 HSPs)
scaffold0443 (373-419)||(6564-6610)
[»] scaffold0486 (1 HSPs)
scaffold0486 (360-409)||(1519-1568)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-151; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 351 - 702
Target Start/End: Complemental strand, 11308328 - 11307962
Alignment:
Q  351 ggggtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat--ttaatctctcttttcgaacaaaatcaagt 448  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  11308328 ggggtagatttgctaacttactccttcgtgtttttaagtgggagtaagttagcaaccccttatatatatatttaatctctcttttcgaacaaaatcaagt 11308229  T
Q  449 agtttcatactctgg-------------tgagcttagctgttagttaggacaacgcataaaatatgcaaagtacgaggttcaaatctcgaacacttaaaa 535  Q
    | ||||||| ||||              | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  11308228 aatttcatattctgcatgaacgtcctgataaacttagctgttagttaggacaacgcataaaatatgcaaagtacgaggtttaaatcccgaacacttaaaa 11308129  T
Q  536 tattctgcatgaactacgacgactgaaaacaaaacccttacaaacagtgaaatgaataagtttagaagattttaccataaacagttttggtggcgtttcg 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11308128 tattctgcatgaactacgacgactgaaaacaaaacccttacaaacagtgaaatgaataagtttagaagattttaccataaacagttttggtggcgtttcg 11308029  T
Q  636 agaaaaaccaccaataattttttcagtatcagtgaaggaaacagaagaaagcgttgttcctatgata 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11308028 agaaaaaccaccaataattttttcagtatcagtgaaggaaacagaagaaagcgttgttcctatgata 11307962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 11308704 - 11308445
Alignment:
Q  18 ataagatcattttagtttatttcttgtcaaaaaatcattttagtttatttataaagataagatgtatcaagtaaatgtttaagtggaacttctattgttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11308704 ataagatcattttagtttatttcttgtcaaaaaatcattttagtttatttataaagataagatgtatcaagtaaatgtttaagtggaacttctatggttt 11308605  T
Q  118 tatttattaaaattttatttctttggtacaacttccatgggtgagaaaatcaattggatttgtgatgcatttgtgtgcgtctccagaaaattccacaaaa 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11308604 tatttattaaaattttatttctttggcacaacttccatgggtgagaaaatcaattggatttgtgatgcatttgtgtgcgtctccagaaaattccacaaaa 11308505  T
Q  218 caacgagaaaacgaaaacataagaacgggaaacggtgtcgtgggaagcagcaacaacatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11308504 caacgagaaaacgaaaacataagaacgggaaacggtgtcgtgggaagcagcaacaacatt 11308445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 354 - 409
Target Start/End: Original strand, 11314008 - 11314063
Alignment:
Q  354 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 409  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  11314008 gtagacttgctaacttactctttcatatttttaggtgagagtaagttagcaacccc 11314063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 352
Target Start/End: Complemental strand, 11308400 - 11308370
Alignment:
Q  322 ttacaattatgttcattcattaaactagtgg 352  Q
    |||||||||||||||||||||||||||||||    
T  11308400 ttacaattatgttcattcattaaactagtgg 11308370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 11589355 - 11589401
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaac 406  Q
    |||||||||||||||||||| |||||| ||| |||||||||| ||||    
T  11589355 ttgctaacttactccttcatgtttttaggtgggagtaagttaacaac 11589401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 607875 - 607830
Alignment:
Q  364 taacttactccttcatatttttaagtgagagtaagttagcaacccc 409  Q
    |||||||||| ||||  |||||| ||||||||||||||||||||||    
T  607875 taacttactctttcacgtttttaggtgagagtaagttagcaacccc 607830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 485 - 525
Target Start/End: Complemental strand, 16125063 - 16125023
Alignment:
Q  485 acaacgcataaaatatgcaaagtacgaggttcaaatctcga 525  Q
    |||| |||||| ||||||||||| |||||||||||||||||    
T  16125063 acaatgcataatatatgcaaagtccgaggttcaaatctcga 16125023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 43021304 - 43021423
Alignment:
Q  74 ataagatgtatcaagtaaatgtttaagtggaacttctattgttttatttattaaaatttta-tttctttggtacaacttccatgggtgagaaaatcaatt 172  Q
    |||||||| ||||||| ||||||| ||||||||||| ||  ||||||||||||| ||||||  || ||| |||||||||||| ||  |||||||||||||    
T  43021304 ataagatgcatcaagtcaatgtttcagtggaacttccatgattttatttattaatattttacatttttttgtacaacttccagggtggagaaaatcaatt 43021403  T
Q  173 ggatttgtgatgcatttgtg 192  Q
    |||||||||| | |||||||    
T  43021404 ggatttgtgaagaatttgtg 43021423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 43020079 - 43020020
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 419  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||||    
T  43020079 ttgctaacttactccttcatgtttttaggtgggagtaagttagcagccccatatatatat 43020020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 43021651 - 43021695
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagca 404  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  43021651 ttgctaacttactccttcatgtttttaagtgggagtaagttagca 43021695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 37521900 - 37521841
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 419  Q
    |||||||||||||||||||| |||||  ||| ||||||||||||| |||| |||||||||    
T  37521900 ttgctaacttactccttcatgtttttgggtgggagtaagttagcagccccatatatatat 37521841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 8237781 - 8237726
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatat 415  Q
    ||||||||||| ||||||||||||||| ||| |||||||||| || |||| |||||    
T  8237781 ttgctaacttattccttcatatttttaggtgggagtaagttaacagccccctatat 8237726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 8993715 - 8993660
Alignment:
Q  354 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 409  Q
    ||||| ||||||||||||||||||||  ||||   |||||||||||||||||||||    
T  8993715 gtagacttgctaacttactccttcatgattttggatgagagtaagttagcaacccc 8993660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 24516046 - 24515987
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 419  Q
    |||||||||  || ||||||||||||  ||| |||||||||||||||||| |||||||||    
T  24516046 ttgctaactcgcttcttcatatttttgggtgtgagtaagttagcaaccccatatatatat 24515987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 36656897 - 36656944
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacc 407  Q
    ||||||||||||| |||||| |||||| |||||||||||||| |||||    
T  36656897 ttgctaacttacttcttcatgtttttaggtgagagtaagttaacaacc 36656944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 99 - 250
Target Start/End: Complemental strand, 35909256 - 35909110
Alignment:
Q  99 agtggaacttctattgttttatttattaaaattttatttctttggtacaacttccatgggtgagaaaatcaattggatttgtgatgcatttgtgtgcgtc 198  Q
    ||||||||||| || ||||| |||||||  |||||  |||||| |||||| |||||  | ||||||||| ||||||||||| |||| |||   ||| |||    
T  35909256 agtggaacttccatggttttctttattagtatttt--ttcttttgtacaatttccaatgttgagaaaattaattggatttgcgatgaatt---gtgagtc 35909162  T
Q  199 tccagaaaattccacaaaacaacgagaaaacgaaaacataagaacgggaaac 250  Q
    ||||||||||| |||||||||     |||| |||||||||||||||||||||    
T  35909161 tccagaaaattacacaaaacataagcaaaatgaaaacataagaacgggaaac 35909110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 10765807 - 10765748
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 419  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||||    
T  10765807 ttgctaacttactccttcatgtttttaggtgggagtaagttagcagccccatatatatat 10765748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 419
Target Start/End: Complemental strand, 5493328 - 5493263
Alignment:
Q  354 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 419  Q
    ||||| ||||||||||||| ||||||||||||  ||  ||||||||||||| |||| |||||||||    
T  5493328 gtagacttgctaacttactgcttcatatttttgggttggagtaagttagcagccccatatatatat 5493263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 3346088 - 3346028
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatatt 420  Q
    |||||||||||||||||||| |||||| ||| || |||||||||| |||  ||||||||||    
T  3346088 ttgctaacttactccttcatgtttttaggtgggactaagttagcagccctctatatatatt 3346028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 5494131 - 5494191
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccct-tatatatat 419  Q
    |||||||||||||||||||| |||||  ||| || |||||||||||||||| |||||||||    
T  5494131 ttgctaacttactccttcatgtttttgggtgggaataagttagcaacccctatatatatat 5494191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 12215049 - 12214989
Alignment:
Q  345 actagtggg-gtagatttgctaacttactccttcatatttttaagtgagagtaagttagca 404  Q
    ||||||||| ||||| ||||||||||||||| |||| ||||| |||| |||||||||||||    
T  12215049 actagtgggagtagagttgctaacttactccatcatgtttttgagtgggagtaagttagca 12214989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 38832889 - 38832845
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagca 404  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||    
T  38832889 ttgctaacttactccttcatgtttttaggtgggagtaagttagca 38832845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 404
Target Start/End: Original strand, 14230477 - 14230520
Alignment:
Q  361 tgctaacttactccttcatatttttaagtgagagtaagttagca 404  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||    
T  14230477 tgctaacttactccttcatatttttaattggtagtaagttagca 14230520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 419
Target Start/End: Complemental strand, 5489629 - 5489564
Alignment:
Q  354 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 419  Q
    ||||| ||||||||||||||||||||||||||   |  ||||| ||||||| |||| |||||||||    
T  5489629 gtagacttgctaacttactccttcatatttttggattggagtaggttagcagccccctatatatat 5489564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 19986878 - 19986934
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatata 416  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||    
T  19986878 ttgctaacttactccttcatgtttttaggtgggagtaagttagcaaccccctatata 19986934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 2808034 - 2807991
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagc 403  Q
    |||||||||||||||||| | |||||| ||||||||||||||||    
T  2808034 ttgctaacttactccttcgtgtttttaggtgagagtaagttagc 2807991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 3959690 - 3959734
Alignment:
Q  362 gctaacttactccttcatatttttaagtgagagtaagttagcaac 406  Q
    |||||||||||||||||| |||||  ||| |||||||||||||||    
T  3959690 gctaacttactccttcatgttttttggtgggagtaagttagcaac 3959734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 2215691 - 2215740
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 409  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  2215691 ttgctagcttactccttcgtatttttaggtgagagtaagttagcaacccc 2215740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 30925424 - 30925380
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagca 404  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||||    
T  30925424 ttgctaacttactccttaatatttttaggtgggagtaagttagca 30925380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 35603202 - 35603262
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagc-aaccccttatatatat 419  Q
    |||||||||||||||||||| |||||  ||| |||||||||||| |||||| |||||||||    
T  35603202 ttgctaacttactccttcatgtttttgggtgggagtaagttagcaaaccccatatatatat 35603262  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 30926008 - 30926058
Alignment:
Q  354 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagca 404  Q
    ||||| |||||||||||||||||||| ||||||  || |||||||||||||    
T  30926008 gtagacttgctaacttactccttcatgtttttagatgggagtaagttagca 30926058  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 39054014 - 39054055
Alignment:
Q  482 aggacaacgcataaaatatgcaaagtacgaggttcaaatctc 523  Q
    |||| ||||||||||||||||||||| || ||||||||||||    
T  39054014 aggataacgcataaaatatgcaaagtccgcggttcaaatctc 39054055  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 24549965 - 24550025
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccct-tatatatat 419  Q
    |||||||||||||| ||||| ||||| |||| || |||||||||| ||||| |||||||||    
T  24549965 ttgctaacttactcattcatgtttttgagtgggactaagttagcagcccctatatatatat 24550025  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 475 - 530
Target Start/End: Original strand, 744537 - 744592
Alignment:
Q  475 gttagttaggacaacgcataaaatatgcaaagtacgaggttcaaatctcgaacact 530  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||| |||| |||||    
T  744537 gttagttaggacaatgcataaaatatgcaaggtatgaggttcaaacctcggacact 744592  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 38564615 - 38564671
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatata 416  Q
    |||||||||||||||||||| |||||| |||  |||||||||||| |||| ||||||    
T  38564615 ttgctaacttactccttcatgtttttaggtggaagtaagttagcatccccctatata 38564671  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 27530233 - 27530284
Alignment:
Q  368 ttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 419  Q
    |||||||||||| |||||  ||| |||||||||||||||||| |||||||||    
T  27530233 ttactccttcatgtttttgggtgggagtaagttagcaaccccatatatatat 27530284  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 414
Target Start/End: Original strand, 44021780 - 44021835
Alignment:
Q  359 tttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttata 414  Q
    |||||||||||||||||||||||||||| ||| | ||||||| ||| |||| ||||    
T  44021780 tttgctaacttactccttcatatttttaggtgggtgtaagttggcagccccctata 44021835  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 34061360 - 34061324
Alignment:
Q  368 ttactccttcatatttttaagtgagagtaagttagca 404  Q
    |||||||||||||||||| |||| |||||||||||||    
T  34061360 ttactccttcatatttttcagtgtgagtaagttagca 34061324  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 43071726 - 43071770
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagca 404  Q
    |||||||||||||||||||| |||||  |||||||||||||||||    
T  43071726 ttgctaacttactccttcatgtttttgggtgagagtaagttagca 43071770  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 44406917 - 44406858
Alignment:
Q  463 gtgagcttagct--gttagttaggacaacgcataaaatatgcaaagtacgaggttcaaat 520  Q
    ||||||||||||  ||| ||| |||||| ||||||||||||||| || ||||||||||||    
T  44406917 gtgagcttagctcagttggttgggacaatgcataaaatatgcaaggtccgaggttcaaat 44406858  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 4047588 - 4047529
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 419  Q
    |||||||||| | |||| ||||||||||||||| |||||||| || |||| |||||||||    
T  4047588 ttgctaacttgcaccttaatatttttaagtgagtgtaagttaacagccccatatatatat 4047529  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 419
Target Start/End: Original strand, 41829481 - 41829547
Alignment:
Q  354 gtagatttgctaacttactccttcatattttt-aagtgagagtaagttagcaaccccttatatatat 419  Q
    ||||| |||||||||||||||||||| |||||   ||||||||||||||||| | || |||||||||    
T  41829481 gtagacttgctaacttactccttcatgtttttggggtgagagtaagttagcagctccctatatatat 41829547  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 32482427 - 32482394
Alignment:
Q  187 tttgtgtgcgtctccagaaaattccacaaaacaa 220  Q
    ||||||||||||||||||||||| ||||||||||    
T  32482427 tttgtgtgcgtctccagaaaattacacaaaacaa 32482394  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 24409266 - 24409222
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagca 404  Q
    |||||||||||||||||||| |||||  ||| |||||||||||||    
T  24409266 ttgctaacttactccttcatgtttttgggtgggagtaagttagca 24409222  T

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Target: scaffold0443 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 6564 - 6610
Alignment:
Q  373 ccttcatatttttaagtgagagtaagttagcaaccccttatatatat 419  Q
    ||||||| |||||  |||||||||||||||||||||| |||||||||    
T  6564 ccttcatgtttttttgtgagagtaagttagcaaccccctatatatat 6610  T

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Target: scaffold0486 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0486
Description:

Target: scaffold0486; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 1519 - 1568
Alignment:
Q  360 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 409  Q
    |||||||||||||||||||| |||||  ||| |||||||||||| |||||    
T  1519 ttgctaacttactccttcatctttttgggtgcgagtaagttagccacccc 1568  T

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