View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20528_low_7 (Length: 273)
Name: NF20528_low_7
Description: NF20528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20528_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 11106771 - 11106533
Alignment:
| Q |
19 |
atcaatttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttcttgcacttttgaaactcgtgcagtgccatgaattttg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11106771 |
atcaatttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttcttgcacttttgaaactcgtgcagttccatgaattttg |
11106672 |
T |
|
| Q |
119 |
agagcacagtttggaccccttctggtgatggccaaatctcaggttgaagctcataagggccatacactatggcacaggcttcaatgccacagagtgtgct |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| || ||||| |||||||| ||||| |
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| T |
11106671 |
agagcacagattggaccccttctggtgatggccaaatctcaggatgaggctcataagggccatacaatatggcacaagcctcaataccacagagggtgct |
11106572 |
T |
|
| Q |
219 |
aagttcagcaacctttttgaatagactcttcttcctttt |
257 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
11106571 |
aagttcaacaacctttttgaatagactcttcttcctttt |
11106533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 10987056 - 10986823
Alignment:
| Q |
24 |
tttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttcttgcacttttgaaactcgtgcagtgccatgaattttgagagc |
123 |
Q |
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||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10987056 |
tttctcttcagccttcaaaacactttgtgtcaagaaagtttcttggttcatcattttcttgcacttttggaactcgtgcagtgccatgaattttgagagc |
10986957 |
T |
|
| Q |
124 |
acagtttggaccccttctggtgatggccaaatctcaggttgaagctcataagggccatacactatggcacaggcttcaatgccacagagtgtgctaagtt |
223 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || || || ||||| || |||||||||| |
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| T |
10986956 |
acagattggaccccttctggtgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacaaagggtgctaagtt |
10986857 |
T |
|
| Q |
224 |
cagcaacctttttgaatagactcttcttcctttt |
257 |
Q |
| |
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||||||||||||| ||||||| |||||| ||||| |
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| T |
10986856 |
cagcaacctttttcaatagacccttctttctttt |
10986823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 11096076 - 11095838
Alignment:
| Q |
19 |
atcaatttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttcttgcacttttgaaactcgtgcagtgccatgaattttg |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| || ||||||||| |||| |||| |||| |||||||| || ||||| |||| || ||||||||||| |
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| T |
11096076 |
atcaatttctcttcagccttcaaaaccctatgtgtcatgaaagtctcatggtccatctttttattgcacttctggaactcatgcattgtcatgaattttg |
11095977 |
T |
|
| Q |
119 |
agagcacagtttggaccccttctggtgatggccaaatctcaggttgaagctcataagggccatacactatggcacaggcttcaatgccacagagtgtgct |
218 |
Q |
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|
||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||| |||||||| ||||| |
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| T |
11095976 |
agagcacagattggacaccttctggtgatggccaaatctcaggatgaggctcataagggccatacactatggcacaagcctcaataccacagagggtgct |
11095877 |
T |
|
| Q |
219 |
aagttcagcaacctttttgaatagactcttcttcctttt |
257 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||||| |
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| T |
11095876 |
aagttcaacaacctttttgaacagactcttcttcctttt |
11095838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 9895053 - 9895287
Alignment:
| Q |
24 |
tttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttcttgcacttttgaaactcgtgcagtgccatgaatttt-gagag |
122 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||||||||||||| || ||| | |||| || || |||||||| ||||| |
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| T |
9895053 |
tttctctttggccttcagaaccctttgtatcatataagtctcttggttcatcattttctggctcttctcccactcagacattgttctgaatttttgagag |
9895152 |
T |
|
| Q |
123 |
cacagtttggaccccttctggtgatggccaaatctcaggttgaagctcataagggccatacactatggcacaggcttcaatgccacagagtgtgctaagt |
222 |
Q |
| |
|
||| |||||||| || | |||||||||||| |||| |||||| ||||||| || ||||| || |||||||| ||||||| ||||| || ||||| ||| |
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| T |
9895153 |
cactgtttggactccctgtggtgatggccagatcttcggttgaggctcatatggtccatagacaatggcacaagcttcaactccacatagagtgcttagt |
9895252 |
T |
|
| Q |
223 |
tcagcaacctttttgaatagactcttcttcctttt |
257 |
Q |
| |
|
||| |||||| ||||||| || ||||| |||||| |
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| T |
9895253 |
tcataaaccttcttgaataaacccttctgcctttt |
9895287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 11248201 - 11248316
Alignment:
| Q |
110 |
tgaattttgagagcacagtttggaccccttctggtgatggccaaatctcaggttgaagctcataagggccatacactatggcacaggcttcaatgccaca |
209 |
Q |
| |
|
|||||||||||||||| ||||| || |||| || ||||||||| |||| ||||||| |||| || || ||||| ||||||||||| ||||||| ||||| |
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| T |
11248201 |
tgaattttgagagcactgtttgaactccttgtgatgatggccatatcttaggttgaggctcgtatggtccatagactatggcacatgcttcaactccaca |
11248300 |
T |
|
| Q |
210 |
gagtgtgctaagttca |
225 |
Q |
| |
|
|| ||||| |||||| |
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| T |
11248301 |
cagagtgcttagttca |
11248316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 18949877 - 18949759
Alignment:
| Q |
141 |
tggtgatggccaaatctcaggttgaagctcataagggccatacactatggcacaggcttcaatgccacagagtgtgctaagttcagcaaccttt-ttgaa |
239 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||||||||| ||| ||||| |||||||| ||||| || ||||| |||||| ||| |||| || || |
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|
| T |
18949877 |
tggtgatggccaaatctcaagttgtggttcataagggccatacattatagcacaagcttcaattccacaaagggtgcttagttcatcaaactttattcaa |
18949778 |
T |
|
| Q |
240 |
tagactcttcttccttttt |
258 |
Q |
| |
|
|| |||||||||||||||| |
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|
| T |
18949777 |
taaactcttcttccttttt |
18949759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 19004201 - 19004083
Alignment:
| Q |
141 |
tggtgatggccaaatctcaggttgaagctcataagggccatacactatggcacaggcttcaatgccacagagtgtgctaagttcagcaaccttt-ttgaa |
239 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||||||||| ||| ||||| |||||||| ||||| || ||||| |||||| ||| |||| || || |
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|
| T |
19004201 |
tggtgatggccaaatctcaagttgtggttcataagggccatacattatagcacaagcttcaattccacaaagggtgcttagttcatcaaactttattcaa |
19004102 |
T |
|
| Q |
240 |
tagactcttcttccttttt |
258 |
Q |
| |
|
|| |||||||||||||||| |
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|
| T |
19004101 |
taaactcttcttccttttt |
19004083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 257
Target Start/End: Complemental strand, 13308373 - 13308226
Alignment:
| Q |
110 |
tgaattttgagagcacagtttggaccccttctggtgatggccaaatctcaggttgaagctcataagggccatacactatggcacaggcttcaatgccaca |
209 |
Q |
| |
|
||||||||||||||||| ||||||| || || |||||||||||||||||||| | |||||||| || || ||||| ||||| |||||||| ||||| |
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|
| T |
13308373 |
tgaattttgagagcacattttggactccccaaggggatggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccaca |
13308274 |
T |
|
| Q |
210 |
gagtgtgctaagttcagcaacctttttgaatagactcttcttcctttt |
257 |
Q |
| |
|
|| ||||| ||||| ||| ||| || |||| || |||| ||||||| |
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|
| T |
13308273 |
aagcgtgcttagttcgtcaatcttcttcaataaacccttcatcctttt |
13308226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 29358200 - 29358312
Alignment:
| Q |
145 |
gatggccaaatctcaggttgaagctcataagggccatacactatggcacaggcttcaatgccacagagtgtgctaagttcagcaacctttttgaatagac |
244 |
Q |
| |
|
|||||||||| |||||||||| | || || || | ||| | ||| ||||| || ||||| |||||||| ||||| |||||| ||||||||| | ||||| |
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|
| T |
29358200 |
gatggccaaacctcaggttgaggatcgtatggactatagattatagcacaagcatcaataccacagagggtgctgagttcactaacctttttcattagac |
29358299 |
T |
|
| Q |
245 |
tcttcttcctttt |
257 |
Q |
| |
|
||||||||||| |
|
|
| T |
29358300 |
ctttcttcctttt |
29358312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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