View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20528_low_9 (Length: 245)
Name: NF20528_low_9
Description: NF20528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20528_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 52968596 - 52968370
Alignment:
| Q |
19 |
cattttgtattttatcctgagtcatgtactattgtgacaacgaggtgcaaagtgaaggaccaaagtaaccatttatcatttaaaaaatatgaagttatga |
118 |
Q |
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| T |
52968596 |
cattttgtattttatcttgagtcatgtaccattgtgacaacgaggtgcaaagtgaaggaccaaagtaaccatttatcatttaaaaaatatgaagttatga |
52968497 |
T |
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| Q |
119 |
ttgtgttgtttcaaatatattcgaaataatataa-nnnnnnnaacaaacgaaataatataaaattaaatatgtgtcacggttaaggagttaaacaagtac |
217 |
Q |
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| T |
52968496 |
ttgtgttgtttcaaatatattcgaaataatataatttttttgaacaaacgaaataatataaaattaaatatgtgtcgc-gttaaggagttaaacaagtac |
52968398 |
T |
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| Q |
218 |
tttacttccaattgctagtcatatagac |
245 |
Q |
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| T |
52968397 |
tttacttccaattgctagtcatatagac |
52968370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 11060833 - 11060906
Alignment:
| Q |
20 |
attttgtattttatcctgagtcatgtactattgtgacaacgaggtgcaaagtgaaggaccaaagtaaccattta |
93 |
Q |
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| T |
11060833 |
attttgtatttaattttgagtcatggacctttgtgacagcgaggtgcatagtcaaggatcaaagtgaccattta |
11060906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 43539179 - 43539106
Alignment:
| Q |
20 |
attttgtattttatcctgagtcatgtactattgtgacaacgaggtgcaaagtgaaggaccaaagtaaccattta |
93 |
Q |
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|||||||| ||||||||||||| | |||| |||||| ||||||||||||| | |||||||||| || ||||| |
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| T |
43539179 |
attttgtagtttatcctgagtcggggactaaagtgacagcgaggtgcaaagttagggaccaaagtgactattta |
43539106 |
T |
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