View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20529_high_15 (Length: 314)
Name: NF20529_high_15
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20529_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 9643936 - 9644232
Alignment:
| Q |
1 |
aagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagattgagatctgccaggcatatatcttttta |
100 |
Q |
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| T |
9643936 |
aagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagatcgagatctgccaggcatatatcttttta |
9644035 |
T |
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| Q |
101 |
tgtttccatttccgtgtatagtttctatatcaaacggcaatcagtttcagcaaaatttatacaacttttcatgaacaggaggagaacaaaatcttggaga |
200 |
Q |
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| T |
9644036 |
tgtttccatttccgtgtatagtttctatatcaaacggcaatcagtttcagcaaaatttatacaacttttcatgaacaggaggagaacaaaatcttggaga |
9644135 |
T |
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| Q |
201 |
aaagccaccgtcaaaagattgtggaagttgagaaacttagccaaacaattcatgaacttgaggagctcatcttatcaaatggagccaccgctaatct |
297 |
Q |
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| T |
9644136 |
aaagccaccgtcaaaagattgtggaagttgagaaacttagccaaacaattcatgaacttgaggagctcatcttatcaaatggagccaccgctaatct |
9644232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 274
Target Start/End: Original strand, 56006944 - 56007044
Alignment:
| Q |
174 |
aacaggaggagaacaaaatcttggagaaaagccaccgtcaaaagattgtggaagttgagaaacttagccaaacaattcatgaacttgaggagctcatctt |
273 |
Q |
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| T |
56006944 |
aacaggaggagaccaaaattttagagaaatctcaccgccaaaagattcttgaagttgaaaagcttagccaaaccattcaagaacttgaggaagtcatctt |
56007043 |
T |
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| Q |
274 |
a |
274 |
Q |
| |
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| T |
56007044 |
a |
56007044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 56006800 - 56006856
Alignment:
| Q |
32 |
gaagaagttcagaatgaaaactttgacttgaagagacagattgagatctgccaggca |
88 |
Q |
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||||||||||| ||| |||| ||||| || |||||||||||||| |||| ||||||| |
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| T |
56006800 |
gaagaagttcaaaatcaaaattttgatttaaagagacagattgatatctaccaggca |
56006856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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