View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20529_high_17 (Length: 237)

Name: NF20529_high_17
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20529_high_17
NF20529_high_17
[»] chr7 (11 HSPs)
chr7 (1-230)||(24288845-24289074)
chr7 (121-198)||(24844608-24844685)
chr7 (121-184)||(24934839-24934902)
chr7 (142-228)||(25621702-25621788)
chr7 (121-230)||(27067818-27067926)
chr7 (121-230)||(27210387-27210495)
chr7 (129-230)||(32793214-32793315)
chr7 (140-227)||(8879525-8879612)
chr7 (121-230)||(13578300-13578408)
chr7 (123-227)||(2677768-2677872)
chr7 (167-230)||(33060891-33060954)
[»] chr2 (13 HSPs)
chr2 (121-230)||(15441950-15442059)
chr2 (137-227)||(37607153-37607243)
chr2 (140-219)||(26586285-26586364)
chr2 (140-230)||(18675138-18675228)
chr2 (123-227)||(38853792-38853896)
chr2 (121-230)||(14887477-14887586)
chr2 (119-230)||(34582649-34582760)
chr2 (156-230)||(26585148-26585222)
chr2 (119-230)||(31091506-31091617)
chr2 (140-230)||(17466807-17466897)
chr2 (138-179)||(18676926-18676967)
chr2 (123-227)||(7412129-7412233)
chr2 (129-193)||(11985734-11985798)
[»] chr8 (12 HSPs)
chr8 (140-230)||(28524812-28524902)
chr8 (119-230)||(31074027-31074138)
chr8 (125-230)||(28619028-28619133)
chr8 (121-193)||(24198969-24199041)
chr8 (123-225)||(9625227-9625329)
chr8 (123-230)||(5965421-5965528)
chr8 (142-228)||(28006576-28006662)
chr8 (142-228)||(28063879-28063965)
chr8 (140-218)||(28619536-28619614)
chr8 (140-206)||(2552068-2552134)
chr8 (127-193)||(12637774-12637840)
chr8 (125-206)||(8569447-8569528)
[»] chr3 (6 HSPs)
chr3 (124-230)||(29188369-29188475)
chr3 (123-227)||(39497244-39497348)
chr3 (121-230)||(36827454-36827563)
chr3 (140-220)||(47118040-47118120)
chr3 (123-223)||(19114570-19114670)
chr3 (122-230)||(53959079-53959187)
[»] chr4 (9 HSPs)
chr4 (140-230)||(21621877-21621967)
chr4 (121-230)||(4703196-4703305)
chr4 (142-227)||(32244670-32244755)
chr4 (142-230)||(21623096-21623184)
chr4 (140-230)||(2786275-2786367)
chr4 (167-230)||(24753540-24753603)
chr4 (146-230)||(25810392-25810476)
chr4 (173-230)||(39869007-39869064)
chr4 (144-192)||(32244332-32244380)
[»] chr1 (15 HSPs)
chr1 (123-228)||(8975196-8975301)
chr1 (123-218)||(44719387-44719482)
chr1 (142-227)||(50107185-50107270)
chr1 (123-206)||(26519105-26519188)
chr1 (121-220)||(5782449-5782548)
chr1 (121-227)||(11060766-11060872)
chr1 (121-230)||(32665749-32665858)
chr1 (123-176)||(39977369-39977422)
chr1 (167-220)||(44720838-44720891)
chr1 (134-230)||(6612467-6612563)
chr1 (123-179)||(18897920-18897976)
chr1 (183-230)||(1407737-1407784)
chr1 (123-230)||(29765960-29766067)
chr1 (167-230)||(33342497-33342560)
chr1 (137-230)||(39725390-39725483)
[»] chr5 (4 HSPs)
chr5 (121-230)||(9537058-9537166)
chr5 (121-220)||(16611763-16611862)
chr5 (131-227)||(30970567-30970663)
chr5 (140-230)||(9538028-9538118)
[»] chr6 (4 HSPs)
chr6 (127-226)||(24621345-24621444)
chr6 (123-202)||(12676477-12676556)
chr6 (121-226)||(29845516-29845620)
chr6 (125-225)||(29350193-29350292)
[»] scaffold0767 (1 HSPs)
scaffold0767 (134-229)||(5647-5742)
[»] scaffold0237 (1 HSPs)
scaffold0237 (121-226)||(1721-1825)
[»] scaffold0016 (1 HSPs)
scaffold0016 (123-172)||(36560-36609)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24289074 - 24288845
Alignment:
Q  1 tgaacatatctcagaagaattcataataaaaccaaagaacttgtcagaaaatgtttgcataatttcatacaaaaaatgaaggtgtaattgatatcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24289074 tgaacatatctcagaagaattcataataaaaccaaagaacttgtcagaaaatgtttgcataatttcatacaaaaaatgaaggtgtaattgatatcattaa 24288975  T
Q  101 attcttgagtaaatcgttttgctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  24288974 attcttgagtaaatcgttttgctgtcacaaagatctctaactcaggattaattacaaagtagtccttgaatgtgcacttccattatcactttattctctg 24288875  T
Q  201 gcgttatataattttgttaactgatgatgt 230  Q
    ||||||||||||| ||||||||||||||||    
T  24288874 gcgttatataattctgttaactgatgatgt 24288845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 24844608 - 24844685
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctc 198  Q
    |||||||| ||| ||  |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||    
T  24844608 gctgtcaccaaggtccataactcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagtctc 24844685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 24934839 - 24934902
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcatt 184  Q
    |||||||||||| ||||| ||| |||||||| |||||| |||||||||||||||||||||||||    
T  24934839 gctgtcacaaaggtctctgacttaggattaaatacaaaatagtcattgaatgtgcactttcatt 24934902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 25621788 - 25621702
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgat 228  Q
    |||||||||| |||||| ||||  ||||||||||||||   ||||||||||| || ||| ||||| |||||||||||||||||||||    
T  25621788 tcaggattaaatacaaattagtttttgaatgtgcacttctgttatcactttagtcactgacgttaaataattttgttaactgatgat 25621702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 27067818 - 27067926
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||| |||||||||| |||| |||||||   ||||||||||  ||||||||||||||||||||||||||| |||||| | ||| |||||| || |||    
T  27067818 gctgtcataaagatctctgactc-ggattaaaagcaaagtagtccctgaatgtgcactttcattatcactttagtctctgacattaaataattatgctaa 27067916  T
Q  221 ctgatgatgt 230  Q
    | | ||||||    
T  27067917 cgggtgatgt 27067926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 27210495 - 27210387
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||| |||||||||| |||| |||||||   ||||||||||  ||||||||||||||||||||||||||| |||||| | ||| |||||| || |||    
T  27210495 gctgtcataaagatctctgactc-ggattaaaagcaaagtagtccctgaatgtgcactttcattatcactttagtctctgacattaaataattatgctaa 27210397  T
Q  221 ctgatgatgt 230  Q
    | | ||||||    
T  27210396 cgggtgatgt 27210387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 32793214 - 32793315
Alignment:
Q  129 aaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgat 228  Q
    |||| ||||||||| |||||||| ||||||  ||||||||| | |||| ||   ||||||||||| ||| |||||||| |||||| ||||||||||||||    
T  32793214 aaaggtctctaacttaggattaaatacaaataagtcattgattctgcatttcggttatcactttagtctttggcgttaaataattatgttaactgatgat 32793313  T
Q  229 gt 230  Q
    ||    
T  32793314 gt 32793315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 8879612 - 8879525
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatga 227  Q
    |||||||||||| |||||||||||   |||||||||| ||   ||||||||||| || ||| ||||| ||||||||||||||| ||||    
T  8879612 actcaggattaaatacaaagtagttcctgaatgtgcatttctgttatcactttagtccctgacgttaaataattttgttaactaatga 8879525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 13578408 - 13578300
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||| ||||||| || |||||| ||||| ||||||  ||||| ||| | ||||||| | ||||||||||| || ||| ||||| |||||| ||||||    
T  13578408 gctgtcataaagatcactgactcagaattaaatacaaataagtcactgactctgcacttccgttatcactttagtc-ctgacgttaaataattatgttaa 13578310  T
Q  221 ctgatgatgt 230  Q
     |||||||||    
T  13578309 gtgatgatgt 13578300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 2677872 - 2677768
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    |||||||||| ||| | ||||| |||||| ||||||||| ||  | ||||||||||||| |||||| |||| || || |||||| | | ||| |||||||    
T  2677872 tgtcacaaaggtctatgactcatgattaaatacaaagtattccctaaatgtgcactttcgttatcagtttagtccctcgcgttaaaaactttagttaact 2677773  T
Q  223 gatga 227  Q
    |||||    
T  2677772 gatga 2677768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 33060891 - 33060954
Alignment:
Q  167 tgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||||| ||||| | ||||||||||| |||||| ||||| |||||| |||||| |||||||||    
T  33060891 tgaatgtacacttccgttatcactttagtctctgacgttaaataattctgttaaatgatgatgt 33060954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 15442059 - 15441950
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||||||||  || |||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||| | |||| |||||||||||||    
T  15442059 gctgtcacaaagattcctgactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctctagtgttaaataattttgttaa 15441960  T
Q  221 ctgatgatgt 230  Q
    ||||||||||    
T  15441959 ctgatgatgt 15441950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 37607153 - 37607243
Alignment:
Q  137 ctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatga 227  Q
    |||||||| |||||| ||||| |||||| || ||||||||||| | ||||||||||| || ||| |||||||||||| |||||||||||||    
T  37607153 ctaactcatgattaaatacaaggtagtcctttaatgtgcacttccgttatcactttagtccctgacgttatataattatgttaactgatga 37607243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 26586364 - 26586285
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtta 219  Q
    ||||| |||||| || ||||||||| |||||||||||||| | ||||||||||| |||||||||||| |||||| |||||    
T  26586364 actcaagattaaatataaagtagtctttgaatgtgcacttccgttatcactttagtctctggcgttaaataattatgtta 26586285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 18675138 - 18675228
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||| ||||| || ||| ||||| ||| |||||||||| ||||||||||||| ||| |||||| | |||||||||||||||||| ||||    
T  18675138 actcagaattaaatataaaatagtccttggatgtgcacttccattatcactttagtctttggcgtcaaataattttgttaactgataatgt 18675228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 38853792 - 38853896
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    ||||| |||| ||||| |||||||||||| ||||||||||||  | ||||||||||| | |||||| |||| || ||| ||||| |||||| ||||||||    
T  38853792 tgtcataaaggtctctgactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtcactgacgttaaataattatgttaact 38853891  T
Q  223 gatga 227  Q
     ||||    
T  38853892 catga 38853896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 14887586 - 14887477
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    |||||||| ||| || || ||||||||||||  | ||||||  |  |||||||||| || |||  |||||||| ||||| |||||| |||||||||||||    
T  14887586 gctgtcacgaaggtccctgactcaggattaaacataaagtataccctgaatgtgcaattccatcgtcactttaatctctagcgttaaataattttgttaa 14887487  T
Q  221 ctgatgatgt 230  Q
    ||||||||||    
T  14887486 ctgatgatgt 14887477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 34582760 - 34582649
Alignment:
Q  119 ttgctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtt 218  Q
    ||||||| |||||| ||  | |||| ||||||| ||||||||||||  ||||||||||||| | ||||||||||| || ||| ||||| |||||| | |     
T  34582760 ttgctgttacaaaggtcattgactcgggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagtccctgacgttaaataattatatc 34582661  T
Q  219 aactgatgatgt 230  Q
    ||||||| ||||    
T  34582660 aactgatcatgt 34582649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 26585148 - 26585222
Alignment:
Q  156 aaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||||||||||| |||| |||||   ||||||||||| ||||| |||||| |||||| |||||| |||||||||    
T  26585148 aaagtagtcattggatgtacacttctgttatcactttagtctctagcgttaaataattatgttaattgatgatgt 26585222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 31091617 - 31091506
Alignment:
Q  119 ttgctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtt 218  Q
    ||||||||||| || || || |||||||||||| ||||||  ||||  ||| | ||||||| | ||||||||||| |||||| ||||| | || | ||||    
T  31091617 ttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtctctgacgttaaaaaaatatgtt 31091518  T
Q  219 aactgatgatgt 230  Q
    || |||||||||    
T  31091517 aagtgatgatgt 31091506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 17466897 - 17466807
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||| ||||||| ||||  ||| | ||||||| | ||||||||||| |||  | ||||| |||||| |||||| |||||||||    
T  17466897 actcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtctaagacgttaaataattctgttaagtgatgatgt 17466807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 18676967 - 18676926
Alignment:
Q  138 taactcaggattaattacaaagtagtcattgaatgtgcactt 179  Q
    ||||| |||||||| |||||| ||||||||||||||||||||    
T  18676967 taactaaggattaaatacaaaatagtcattgaatgtgcactt 18676926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 7412129 - 7412233
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    ||||||| |||||||| ||||| |||||| || |||| ||||| |||  |||||||| | ||||||||||| || ||  | ||| |||||| |||||| |    
T  7412129 tgtcacatagatctctgactcaagattaaatataaagaagtcactgatagtgcacttccgttatcactttagtccctaacattaaataattatgttaagt 7412228  T
Q  223 gatga 227  Q
    |||||    
T  7412229 gatga 7412233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 11985734 - 11985798
Alignment:
Q  129 aaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcacttta 193  Q
    |||| ||||| |||||||||||| ||||||||||||  |||| ||||| |||| |||||| ||||    
T  11985734 aaaggtctctgactcaggattaaatacaaagtagtctctgaaggtgcattttcgttatcagttta 11985798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 28524812 - 28524902
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||| ||||||||| || |||||||||||||| | |||||| |||| |||||| ||||| |||||||||||||||||||||||    
T  28524812 actcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagtctctgacgttaaataattttgttaactgatgatgt 28524902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 31074027 - 31074138
Alignment:
Q  119 ttgctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtt 218  Q
    |||||||||||||  ||||| |||| ||||||| | |||||||||   |||||||||||||   ||||||||||| |||||||  ||| |||||||||||    
T  31074027 ttgctgtcacaaaagtctctgactctggattaaatgcaaagtagtttctgaatgtgcacttctgttatcactttagtctctggaattaaataattttgtt 31074126  T
Q  219 aactgatgatgt 230  Q
    ||||||||||||    
T  31074127 aactgatgatgt 31074138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 28619028 - 28619133
Alignment:
Q  125 tcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactga 224  Q
    |||||||| || || || || |||||| ||||||| | ||||||| | ||||||||| ||||||||||| |||| | ||||| ||||||||||||| |||    
T  28619028 tcacaaaggtccctgacccatgattaaatacaaagaaatcattgactctgcactttcgttatcactttagtctcggccgttaaataattttgttaagtga 28619127  T
Q  225 tgatgt 230  Q
    ||||||    
T  28619128 tgatgt 28619133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 24198969 - 24199041
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcacttta 193  Q
    |||||||||||| ||| | | |||||||||| ||||||||| ||||||||||||||||| | |||||||||||    
T  24198969 gctgtcacaaaggtctttgattcaggattaaatacaaagtaatcattgaatgtgcacttccgttatcacttta 24199041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 9625227 - 9625329
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    ||||||||||| | || ||| ||||||||  ||||||||||  |||||| ||||||| ||||||||||||| ||| | | |||| |||||| ||||||||    
T  9625227 tgtcacaaagaccactgacttaggattaaacacaaagtagtacttgaatatgcacttccattatcactttagtctttagtgttaaataattatgttaact 9625326  T
Q  223 gat 225  Q
    |||    
T  9625327 gat 9625329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 5965528 - 5965421
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    |||||||||  || || |||||||||||| ||||||| |||| |||| | ||||||| | ||||||||||| |||||| ||||| || ||| |||||| |    
T  5965528 tgtcacaaatgtccctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatcactttagtctctgacgttaaatgattatgttaagt 5965429  T
Q  223 gatgatgt 230  Q
     |||||||    
T  5965428 aatgatgt 5965421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 28006662 - 28006576
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgat 228  Q
    |||| ||||| || ||||||||| ||||||||| |||| | |||||||||||  | ||| ||||| |||||| ||||||||||||||    
T  28006662 tcagaattaaatataaagtagtccttgaatgtgtacttccgttatcactttaacccctgacgttaaataattctgttaactgatgat 28006576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 28063965 - 28063879
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgat 228  Q
    |||| ||||| || ||||||||| ||||||||| |||| | |||||||||||  | ||| ||||| |||||| ||||||||||||||    
T  28063965 tcagaattaaatataaagtagtccttgaatgtgtacttccgttatcactttaacccctgacgttaaataattctgttaactgatgat 28063879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 28619614 - 28619536
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtt 218  Q
    |||||||||||| |||||||  |||||||| | |||||||  |||||||||||| |||||| | ||| |||||||||||    
T  28619614 actcaggattaaatacaaagaggtcattgactctgcacttctattatcactttagtctctgacattaaataattttgtt 28619536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 2552068 - 2552134
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgtta 206  Q
    |||||||||||| ||||||||| || ||||||||||| |||| |||||  |||| ||| ||||||||    
T  2552068 actcaggattaaatacaaagtaatccttgaatgtgcattttctttatcggtttagtctatggcgtta 2552134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 12637840 - 12637774
Alignment:
Q  127 acaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcacttta 193  Q
    |||||| || ||||||||||||| | |||||||||||   ||||||||||||| | |||||||||||    
T  12637840 acaaaggtccctaactcaggattgaatacaaagtagttcctgaatgtgcacttccgttatcacttta 12637774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 8569447 - 8569528
Alignment:
Q  125 tcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgtta 206  Q
    |||||||| ||| | ||||| |||||| |||||||||||   ||||||||||||||| |||||| |||| || ||| |||||    
T  8569447 tcacaaaggtctttgactcatgattaaatacaaagtagtttatgaatgtgcactttcgttatcagtttagtccctgacgtta 8569528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 29188475 - 29188369
Alignment:
Q  124 gtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactg 223  Q
    ||||||||  |||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| |   || | ||| ||||||||||||||||    
T  29188475 gtcacaaaagtctctatcttaggattaattacaaagtagtcattgaatatgcactttcattatcactttagttcatgacattaaataattttgttaactg 29188376  T
Q  224 atgatgt 230  Q
     ||||||    
T  29188375 ttgatgt 29188369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 39497244 - 39497348
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    |||||||||| ||  | |||||||||||| |||||| |||| ||||||||||||||||| |||||| |||| |||||| ||||| | | | |||||||||    
T  39497244 tgtcacaaaggtccatgactcaggattaaatacaaaatagttattgaatgtgcactttcgttatcagtttaatctctgtcgttaaaaactcttgttaact 39497343  T
Q  223 gatga 227  Q
    |||||    
T  39497344 gatga 39497348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 36827563 - 36827454
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||| |||||||||  | |||||||||||| || ||| || ||  ||||||| ||||| | ||||||||||| ||||||  |||| |||||||||||||    
T  36827563 gctgtgacaaagatccttgactcaggattaaatataaaataatctctgaatgtacacttccgttatcactttagtctctgatgttaaataattttgttaa 36827464  T
Q  221 ctgatgatgt 230  Q
     |||||||||    
T  36827463 gtgatgatgt 36827454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 47118120 - 47118040
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    |||||||||||| | ||||| ||||  ||| | ||||||||| ||||||||||| || ||| ||||| |||||||||||||    
T  47118120 actcaggattaaatgcaaagaagtctctgactctgcactttcgttatcactttagtccctgacgttaaataattttgttaa 47118040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 19114570 - 19114670
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    ||||||| || || || ||||| |||||| ||||||| ||||| | | | ||||||| | ||||||||||| |||||  ||||| |||||| ||||||||    
T  19114570 tgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatcactttagtctcttacgttaaataattctgttaact 19114669  T
Q  223 g 223  Q
    |    
T  19114670 g 19114670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 53959187 - 53959079
Alignment:
Q  122 ctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaac 221  Q
    |||||||| || ||||| ||||| |||||| ||||||  |||   ||| | ||||||| | ||||||||||| |||||| ||||| | || ||||||||     
T  53959187 ctgtcacataggtctctgactcatgattaaatacaaataagttcatgactctgcacttccgttatcactttagtctctgacgttaaaaaaatttgttaag 53959088  T
Q  222 tgatgatgt 230  Q
    |||||||||    
T  53959087 tgatgatgt 53959079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 21621877 - 21621967
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||| |||||| |||||||||||||||||||| | ||||||||||| || |||  |||| |||||| ||||||||||||||||    
T  21621877 actcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgt 21621967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 4703305 - 4703196
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||| || || ||||||||| ||||| ||||||| |||| |||| ||| ||||| | ||||||||||| |||||||| ||| |||||| | ||||    
T  4703305 gctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttatcactttagtctctggcattaaataattctattaa 4703206  T
Q  221 ctgatgatgt 230  Q
     |||||||||    
T  4703205 gtgatgatgt 4703196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 32244755 - 32244670
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatga 227  Q
    ||||||||||  ||||||||||| |||||||||||| | | ||||||||||| || ||| ||||| |||||||||||||| |||||    
T  32244755 tcaggattaaagacaaagtagtccttgaatgtgcacatccgttatcactttagtccctgacgttaaataattttgttaaccgatga 32244670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 21623184 - 21623096
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||| |||||| ||||| ||||||||||||||   ||||||||||| || | | ||||| |||||| |||||||| |||||||    
T  21623184 tcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgttaaataattatgttaactaatgatgt 21623096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 2786275 - 2786367
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcacttta-ttctc-tggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||| |||||| || || |||||||||||||| | |||||| |||| || || || ||||| |||||||||||||||||| ||||    
T  2786275 actcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttagttatcatgacgttaaataattttgttaactgataatgt 2786367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 24753603 - 24753540
Alignment:
Q  167 tgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||||   ||||||||||| ||  | |||||| |||||||||||||||||||||||    
T  24753603 tgaatgtgcacttctgttatcactttagtcattcgcgttaaataattttgttaactgatgatgt 24753540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 25810476 - 25810392
Alignment:
Q  146 gattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataa-ttttgttaactgatgatgt 230  Q
    |||||| |||||||||| |  ||||||||||||| |  |||||||||| |||||| ||||| |||| || ||||||||||||||||    
T  25810476 gattaaatacaaagtagcctatgaatgtgcacttccgctatcactttagtctctgacgtta-ataacttctgttaactgatgatgt 25810392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 39869007 - 39869064
Alignment:
Q  173 tgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||||| | ||||||||||| |||||| ||||| |||||| |||||| |||||||||    
T  39869007 tgcacttccgttatcactttagtctctgacgttaaataattatgttaagtgatgatgt 39869064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 32244332 - 32244380
Alignment:
Q  144 aggattaattacaaagtagtcattgaatgtgcactttcattatcacttt 192  Q
    ||||||||  |||||||||||||| ||||||||||| | ||||||||||    
T  32244332 aggattaaagacaaagtagtcattaaatgtgcacttccgttatcacttt 32244380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 8975196 - 8975301
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    |||||||||| || || ||||| |||||| || |||||||||  ||||| ||||||||| ||||||||||| ||| |||||||| ||||||||||||| |    
T  8975196 tgtcacaaaggtccctgactcaagattaaatataaagtagtccatgaatatgcactttcgttatcactttagtctttggcgttaaataattttgttaatt 8975295  T
Q  223 gatgat 228  Q
    ||||||    
T  8975296 gatgat 8975301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 44719387 - 44719482
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtt 218  Q
    ||||||||||||||||||||||||||||| || ||||||||   ||||| ||||||| | |||||| |||| |||||| | ||| |||||||||||    
T  44719387 tgtcacaaagatctctaactcaggattaaatataaagtagtttatgaatatgcacttccgttatcattttagtctctgtctttaaataattttgtt 44719482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 50107270 - 50107185
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatga 227  Q
    |||||||||| |||||| |||||  ||||||||||||| | ||||||||||| ||  |||||||| |||||| |||||||||||||    
T  50107270 tcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaactgatga 50107185  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 26519188 - 26519105
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgtta 206  Q
    ||||| |||| || ||||||| || |||| |||||||||||| |||||||||||||||  |||||| |||| ||||||||||||    
T  26519188 tgtcataaaggtccctaactccgggttaaatacaaagtagtctttgaatgtgcacttttgttatcagtttaatctctggcgtta 26519105  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 5782449 - 5782548
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||| || ||||| ||||| |||||| ||||||| ||||  ||| | ||||||| | ||||||||||| |||||| ||||| |||||||| ||||    
T  5782449 gctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttcccttatcactttagtctctgacgttaaataattttattaa 5782548  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 11060872 - 11060766
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    |||||||||||| ||  | |||||  ||||| |||||| |||||  |||||| |||||||| ||||||||||| || | | ||||| |||||| ||||||    
T  11060872 gctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcgttatcactttagtccccgacgttaaataattctgttaa 11060773  T
Q  221 ctgatga 227  Q
    |||||||    
T  11060772 ctgatga 11060766  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 32665858 - 32665749
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||| || ||||| ||||| |||||| ||||||  |||| |||| | ||||||| | ||||||||||| || ||||||||| | || | ||||||    
T  32665858 gctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttccgttatcactttagtccctggcgttacaaaaatctgttaa 32665759  T
Q  221 ctgatgatgt 230  Q
     |||||||||    
T  32665758 gtgatgatgt 32665749  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 39977369 - 39977422
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgca 176  Q
    |||||||||  ||||| |||||||||||| |||||| |||||||||||||||||    
T  39977369 tgtcacaaatgtctctgactcaggattaaatacaaattagtcattgaatgtgca 39977422  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 44720891 - 44720838
Alignment:
Q  167 tgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||||||| ||||||||||||| |||||| ||||| |||||||| ||||    
T  44720891 tgaatgtgcacttccattatcactttagtctctgacgttaaataattttattaa 44720838  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 6612467 - 6612563
Alignment:
Q  134 tctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||| ||||| |||||| ||||||  ||||  ||| | ||||||| ||||||||||||| || ||| ||||| ||||||||||||| |||| ||||    
T  6612467 tctctgactcatgattaaatacaaacaagtctctgactctgcacttccattatcactttaatccctgacgttaaataattttgttaagtgattatgt 6612563  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 18897976 - 18897920
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactt 179  Q
    |||||||||| ||||| |||||||||||| || ||||| ||| ||||||||||||||    
T  18897976 tgtcacaaaggtctctgactcaggattaaatataaagttgtctttgaatgtgcactt 18897920  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 1407737 - 1407784
Alignment:
Q  183 ttatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||||||||| || ||| ||||| |||||||||||||||||||||||    
T  1407737 ttatcactttagtccctgacgttaaataattttgttaactgatgatgt 1407784  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 29765960 - 29766067
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    |||||||||| || || |||||  |||||| | |||||||||  || ||||||||||   ||||||||||| ||| | | |||| ||||||||||||| |    
T  29765960 tgtcacaaaggtcactgactcataattaataagaaagtagtctatggatgtgcacttctgttatcactttagtctatagtgttaaataattttgttaatt 29766059  T
Q  223 gatgatgt 230  Q
    ||||||||    
T  29766060 gatgatgt 29766067  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 33342497 - 33342560
Alignment:
Q  167 tgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||||||||| | | ||||||||||| |||||| ||||| |||||| |||||| |||||||||    
T  33342497 tgaatgtgcacatacgttatcactttagtctctgacgttaaataattatgttaagtgatgatgt 33342560  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 39725390 - 39725483
Alignment:
Q  137 ctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||| |||||| |||||| |||| ||||||| ||||||| | |||| | |||| ||| || ||||| | | ||||||| |||||||||||    
T  39725390 ctaactcatgattaaatacaaaatagttattgaatatgcacttccgttattagtttagtctttgacgttaaaaacttttgttgactgatgatgt 39725483  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 9537058 - 9537166
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||| || ||||| ||| || ||||| ||||||| |||||| || ||||||||| ||||||||||||| || ||| ||||| |||||| || |||    
T  9537058 gctgtcacataggtctctgacttagaattaaatacaaagaagtcat-gactgtgcacttccattatcactttagtcactgacgttaaataattatggtaa 9537156  T
Q  221 ctgatgatgt 230  Q
     |||||||||    
T  9537157 gtgatgatgt 9537166  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 16611763 - 16611862
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||| || ||||| |||||||||||| ||||||| || |  ||| | ||||||| | ||||||||||| |||||| ||||| |||||| ||||||    
T  16611763 gctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatcactttagtctctgacgttaaataattctgttaa 16611862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 30970663 - 30970567
Alignment:
Q  131 agatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatga 227  Q
    |||||||| ||||| |||||| ||||||||| |||||||||||||| ||   ||||||||||| || ||  | ||| |||||| ||||||| |||||    
T  30970663 agatctctgactcaagattaaatacaaagtaatcattgaatgtgcatttctgttatcactttagtccctaacattaaataattctgttaaccgatga 30970567  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 9538118 - 9538028
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||| ||||||| ||||  ||| ||||||||| | |||||| |||| ||||||  |||| |||||| |||||| |||| ||||    
T  9538118 actcaggattaaatacaaagaagtctctgattgtgcacttccgttatcattttagtctctgatgttaaataattatgttaagtgattatgt 9538028  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 24621444 - 24621345
Alignment:
Q  127 acaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatg 226  Q
    |||||| ||||| ||| | |||||| |||||||||||  |||||| ||||||||  |||| | |||| |||||||||||| | | |||||||||||||||    
T  24621444 acaaaggtctctgactaatgattaaatacaaagtagtttttgaatttgcacttttgttattagtttagtctctggcgttacaaacttttgttaactgatg 24621345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 12676556 - 12676477
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggc 202  Q
    |||||||| | |||||  ||||||||||| ||||||||||||  | ||||||||||||  |||||| |||| ||||||||    
T  12676556 tgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttgttatcagtttagtctctggc 12676477  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 29845516 - 29845620
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    |||||||||||  |||||||||| ||| ||| ||||||||||||  | || ||||||||   |||||| |||| |||||||||||| | | |||||||||    
T  29845516 gctgtcacaaaagtctctaactcgggaataaatacaaagtagtc-ctaaacgtgcacttctgttatcagtttagtctctggcgttaaaaacttttgttaa 29845614  T
Q  221 ctgatg 226  Q
     |||||    
T  29845615 ttgatg 29845620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 29350292 - 29350193
Alignment:
Q  125 tcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactga 224  Q
    |||||||| ||||| ||||||||||||  ||||||||||   | |||||||| || ||||||||||||| ||| ||  | || || ||||||||||||||    
T  29350292 tcacaaag-tctcttactcaggattaaagacaaagtagttccttaatgtgcatttccattatcactttaatctttgaagataaatgattttgttaactga 29350194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 5647 - 5742
Alignment:
Q  134 tctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatg 229  Q
    ||||| |||||| ||||| ||||||| ||||  ||| | | ||||| | ||||||||||| |||||||||||| |||||| |||||  ||||||||    
T  5647 tctctgactcagaattaaatacaaagaagtccctgactctacacttccgttatcactttagtctctggcgttaaataattatgttatgtgatgatg 5742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 1721 - 1825
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    |||||||||||  |||||||||| ||| ||| ||||||||||||  | || ||||||||   |||||| |||| |||||||||||| | | |||||||||    
T  1721 gctgtcacaaaagtctctaactcgggaataaatacaaagtagtc-ctaaacgtgcacttctgttatcagtttagtctctggcgttaaaaacttttgttaa 1819  T
Q  221 ctgatg 226  Q
     |||||    
T  1820 ttgatg 1825  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 36609 - 36560
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatg 172  Q
    |||||||||| |||||||||| ||||||| |||||||||||  |||||||    
T  36609 tgtcacaaaggtctctaactcgggattaaatacaaagtagttcttgaatg 36560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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