View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20529_high_3 (Length: 643)
Name: NF20529_high_3
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20529_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 143 - 622
Target Start/End: Complemental strand, 13162563 - 13162072
Alignment:
| Q |
143 |
caacatagcggaggttgcagtactaacacactccataattcacatccttcattttatcgaaaaacccattttttccatcaccgcatccaaataattacaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13162563 |
caacatagcggaggttgcagtactaacacactccataatccacatccttcattttatcgaaaaacccattttttccatcaccgcatccaaataattacaa |
13162464 |
T |
|
| Q |
243 |
ttcactgaataatacgc-ttgtcaaaatccactttaaaca------actctttattccattttttagcatcatatatcacttcattagcaacaagaatac |
335 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13162463 |
ttcagtgagtaatacgccttgtcaaaatccactttaaacataatcaactctttattccattttttagcatcatatatcacttcattagcaacaaaaatac |
13162364 |
T |
|
| Q |
336 |
catccaatatctatcttcatttcacaaacgataattattctttaaaatcactttatcaattactaatttgagcctgcttagtaacacttttgccaaaact |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||| |
|
|
| T |
13162363 |
catccaatatctatcttcatttcacaaacgatgattattctttaaaatcactttatcaattactaatttgaacctcctcagtatcacttttgccaaaact |
13162264 |
T |
|
| Q |
436 |
ttatacatacacccaactaaagagataggtgtaaag------agcctatcagatttagacaccttatgtattaaataaataaataaacaattagatcctt |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13162263 |
ttatacatacacccaactaaagagataggtgtaaagtccgcaagcctatcagatttagagaccttaggtattaaataaataaataaacaattagatcctt |
13162164 |
T |
|
| Q |
530 |
tcactagcctaccatacaagtaaaattccagcaaaaatttcataaaattacctttgatgtcaatccataaatcctttataaaaccatagttaa |
622 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
13162163 |
tcaccagcctaccatacaagtaaaattccagcaaaaatttcataaaattacctttgatgtcaatccataaatcc-ttataaaacaaaagttaa |
13162072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 13162722 - 13162590
Alignment:
| Q |
13 |
catcatcaactatataacctttaaacaacccaacatcaacttaagcattcaacaaacatttaatccttcaattgccatcaagaacaagaacaaagacaaa |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13162722 |
catcaccaactatataacctttaaacaacccaacatcaacttaagcattcaacaaacatttaatccttcaattgccatcaagaacaagaacaaagacaaa |
13162623 |
T |
|
| Q |
113 |
cgatctccctgccttaagtctctcccaaatcaa |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
13162622 |
cgatctccctgccttaagtctctcccaaatcaa |
13162590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University