View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20529_high_7 (Length: 400)
Name: NF20529_high_7
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20529_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 42089163 - 42089532
Alignment:
| Q |
20 |
ctattgcatgagatattgtacagaaagtaaatagtactatatgcattttcatgttttcagggcattcaaatttaatttagtgattatcatgatttggtta |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42089163 |
ctattgcatgagatattatacagaaagtaaatagtactatatgcattttcatgttttcagggcattcaaatttaatttagtgattatcatgatttggtta |
42089262 |
T |
|
| Q |
120 |
tttcgttaatgtaaagatacatgaaagggaacaagaaataattatattattctataatgcgtgggtgagtgatctcaaagaaacataactgagacggcac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42089263 |
tttcgttaatgtaaagatacatgaaagggaacaagaaatcattatattattctataatgcgtgggtgagtgatctcaaagaaacataactgggacggcac |
42089362 |
T |
|
| Q |
220 |
ggcacacattgggaagatttcagttggagcataataattaaatatatatgatgagtttggaaaattagctttgaagattaataaaatacattttgtgcat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42089363 |
ggcacacattgggaagatttcagttggagcataataattaaatatatatgatgagtttggaaaattagctttgaagattaataaaatacattttgtgcat |
42089462 |
T |
|
| Q |
320 |
tcacgtggtcataataaacctgttggttatgaattatgcacatgaagacttcatcttttttcgggttcat |
389 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42089463 |
tcacgtgatcataataaacctgttggttatgaattatgcacatgaagacttcatcttttttcgggttcat |
42089532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University