View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20529_high_8 (Length: 391)
Name: NF20529_high_8
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20529_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 381
Target Start/End: Complemental strand, 13798341 - 13797984
Alignment:
| Q |
20 |
cgtgattctctaataaattattagtctaacaaaacatattcggtccctctatgtagatagatgcaatcctaaaatactatgctatctatctatctatcta |
119 |
Q |
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| T |
13798341 |
cgtgattctctaataaattattagtctaacaaaacatattcggtccctctatgtagatagatgcaatcctaaaatactatgctatctatctatctatc-- |
13798244 |
T |
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| Q |
120 |
tccttcaacatggacctatataaatacatatctatgccctctaactttaatactcaaaaaacaatacaaaccnnnnnnnnncatttacaaacaaaccatt |
219 |
Q |
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| T |
13798243 |
--cttcaacatggacctatataaatacatatctatgccctctaattttaatactcaaaaaacaatacaaacaaaaaaaaaacatttacaaacaaaccatt |
13798146 |
T |
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| Q |
220 |
tctttgtccacatttgtgaaatggcacctcaagcagattttgctattgctaagattggatatgaaattgaaaaattctttggaagacagaaaagttttag |
319 |
Q |
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| T |
13798145 |
tctttgtccacatttgtgaaatggcacctcaagcagattttgctattgctaagattggatatgaaattgaaaaattctttggaagacagaaaagttttag |
13798046 |
T |
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| Q |
320 |
caataatagcaaccctccagctactcaaaatctttgtcaatacaaattttatccaacctatg |
381 |
Q |
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| T |
13798045 |
caataatagcaaccctccagctactcaaaatctttgtcaatacaaattttatccaacctatg |
13797984 |
T |
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