View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20529_low_11 (Length: 352)
Name: NF20529_low_11
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20529_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 31717091 - 31717423
Alignment:
| Q |
1 |
ggagaaggtggttttggacctgtatatttggtaatccaatattggagtatgatttctaagtaagaatagcgagataaatatgctgtaaaaatcatctaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717091 |
ggagaaggtggttttggacctgtatatttggtaatccaatattggagtatgatttctaagtaagaatagcgagataaatatgctgtaaaaatcatctaac |
31717190 |
T |
|
| Q |
101 |
cattactatatgaatgtaattaatgattatccagggaaagtttgagagtgggttggaaattgctgtaaaaagactttcacagagctcagcacaagggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717191 |
cattactatatgaatgtaattaatgattatccagggaaagtttgagagtgggttggaaattgctgtaaaaagactttcacagagctcagcacaagggatg |
31717290 |
T |
|
| Q |
201 |
agagagttcataaatgaagtaaaacttatagctaatgttcagcaccgaaatcttgtaacgcttattggttgctgcattcagagagaagaaaaaatgttag |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717291 |
agagagttcataaatgaagtaaaacttatagcaaatgttcagcaccgaaatcttgtaacgcttattggttgctgcattcagagagaagaaaaaatgttag |
31717390 |
T |
|
| Q |
301 |
tttatgaatacatggctaatggtagcctagact |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
31717391 |
tttatgaatacatggctaatggtagcctagact |
31717423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 31724318 - 31724648
Alignment:
| Q |
1 |
ggagaaggtggttttggacctgtatatttggtaatccaatattggagtatgatttctaagtaagaatagcgagataaatatgctgtaaaaatcatctaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
31724318 |
ggagaaggtggttttggacctgtatatttggtaatccaatattggagtatgatttctaagtaagaatagcgagataaatatgctataaaaa-catctaac |
31724416 |
T |
|
| Q |
101 |
cattactatatgaatgtaattaatgattatccagggaaagtttgagagtgggttggaaattgctgtaaaaagactttcacagagctcagcacaagggatg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31724417 |
cattactatatgaatgtaat-aatgattatccagggaaagtttgagtgtgggttagaaattgctgtaaaaagactttcacagagctcagcacaagggatt |
31724515 |
T |
|
| Q |
201 |
agagagttcataaatgaagtaaaacttatagctaatgttcagcaccgaaatcttgtaacgcttattggttgctgcattcagagagaagaaaaaatgttag |
300 |
Q |
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|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31724516 |
cgagaattcataaatgaagtaaaacttattgcaaatgttcagcaccgaaatcttgtaacgcttattggttgctgcattgagagagaagaaaaaatgttag |
31724615 |
T |
|
| Q |
301 |
tttatgaatacatggctaatggtagcctagact |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
31724616 |
tttatgaatacatggctaatggtagcctagact |
31724648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 31701785 - 31702102
Alignment:
| Q |
1 |
ggagaaggtggttttggacctgtatatttggtaatccaatattggagtatgatttctaagtaagaatagcgagataaatatgctgtaaaaatcatctaac |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||||| | |||| | ||||||| |
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| T |
31701785 |
ggagaaggtggttttggaactgtatatttggtaatccaatattggagtatgatt----aatgagaatagctagataaatatgttataaagaacatctaa- |
31701879 |
T |
|
| Q |
101 |
cattactatatgaatgtaattaatgattatccagggaaagtttgagagtgggttggaaattgctgtaaaaagactttcacagagctcagcacaagggatg |
200 |
Q |
| |
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||||||| ||||||||||||||||||||| || | ||||||| | ||||||||| |||| |||||||||||| ||||| |||||||| | |
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| T |
31701880 |
----------tgaatgtgattaatgattatccagggaaaattagggagtgggctagaaattgctataaagagactttcacagggctcaagacaagggacg |
31701969 |
T |
|
| Q |
201 |
agagagttcataaatgaagtaaaacttatagctaatgttcagcaccgaaatcttgtaacgcttattggttgctgcattcagagagaagaaaaaatgttag |
300 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||| |
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| T |
31701970 |
agagagttcataaatgaagtaaaacttattgcaaatgttcagcaccgaaatcttgtaaagcttattggctgttgcattgagagagaagaaaaaatgttag |
31702069 |
T |
|
| Q |
301 |
tttatgaatacatggctaatggtagcctagact |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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| T |
31702070 |
tttatgaatacatggctaatggtagcctggact |
31702102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31722965 - 31723048
Alignment:
| Q |
1 |
ggagaaggtggttttggacctgtatatttggtaatccaatattggagtatgatttctaagtaagaatagcgagataaatatgct |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31722965 |
ggagaaggtggttttggacctgtatatttggtaatccaatattggagtatgatttctaagtaagaatagcgagataaatatgct |
31723048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 333
Target Start/End: Original strand, 31740251 - 31740379
Alignment:
| Q |
205 |
agttcataaatgaagtaaaacttatagctaatgttcagcaccgaaatcttgtaacgcttattggttgctgcattcagagagaagaaaaaatgttagttta |
304 |
Q |
| |
|
||||||||||||||||||| || || || || |||| ||||||||||| ||| ||| | ||||| |||||||| |||||||| ||| || |||| |
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| T |
31740251 |
agttcataaatgaagtaaagctaattgcaaaacttcaacaccgaaatctactaaagctgctaggttgttgcattcaaggagaagaaccgatgctaattta |
31740350 |
T |
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| Q |
305 |
tgaatacatggctaatggtagcctagact |
333 |
Q |
| |
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|||||||||||| ||||| |||||||||| |
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| T |
31740351 |
tgaatacatggccaatggaagcctagact |
31740379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 34328564 - 34328651
Alignment:
| Q |
238 |
ttcagcaccgaaatcttgtaacgcttattggttgctgcattcagagagaagaaaaaatgttagtttatgaatacatggctaatggtag |
325 |
Q |
| |
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|||| |||||||||||||||| |||| ||||||| ||| || | |||| || |||||| | ||||||||||||||| ||||| |||| |
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| T |
34328564 |
ttcaacaccgaaatcttgtaaagcttcttggttgttgccttgaaggagaggagaaaatgctggtttatgaatacatgcctaatagtag |
34328651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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